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用于增强2-甲基丁酸生产的大肠杆菌合成菌群的模型引导合理构建

Model-Guided Rational Construction of Escherichia coli Synthetic Consortia for Enhanced 2-Methylbutyric Acid Production.

作者信息

Liu Yu, Xue Boyuan, Wang Shaojie, Su Haijia

机构信息

State Key Laboratory of Green Biomanufacturing, National Energy R&D Center for Biorefinery, Beijing Key Laboratory of Green Chemicals Biomanufacturing, Beijing Synthetic Bio-manufacturing Technology Innovation Center, Beijing, 102209, P. R. China.

出版信息

Adv Sci (Weinh). 2025 Jun;12(22):e2416272. doi: 10.1002/advs.202416272. Epub 2025 May 5.

Abstract

Synthetic consortia represent an innovative and effective platform that can significantly alleviate the metabolic burden on host organisms and enable flexible regulation of biosynthetic pathways. However, designing a stable synthetic consortium remains a significant challenge. In this study, a novel citramalate -derived pathway is first developed for 2-methylbutyric acid (2MBA) biosynthesis in an E. coli mono-culture system, achieving a titer of 678.78 ± 49.04 mg L. Furthermore, it employs a CulECpy model-guided strategy to design and optimize the division of labor within E. coli synthetic consortia, predicting the optimal pathway allocation for improved 2MBA production. The best-performing consortium, using 2-keto-3-methylvalerate (KMV) as a single node, achieved 1817.03 ± 103.73 mg L of 2MBA, a 28-fold increase over the initial mono-culture strain, with the highest reported yield of 0.091 g/g glucose. This work demonstrates the effectiveness of synthetic consortia and model-guided pathway optimization for improving high-value products, a versatile strategy that can be applied to the production of other valuable metabolites.

摘要

合成菌群代表了一个创新且有效的平台,它能显著减轻宿主生物体的代谢负担,并实现对生物合成途径的灵活调控。然而,设计一个稳定的合成菌群仍然是一项重大挑战。在本研究中,首先在大肠杆菌单培养系统中开发了一条用于合成2-甲基丁酸(2MBA)的新型柠檬酸衍生途径,其产量达到678.78±49.04毫克/升。此外,它采用了CulECpy模型指导策略来设计和优化大肠杆菌合成菌群内的分工,预测了提高2MBA产量的最佳途径分配。表现最佳的菌群以2-酮-3-甲基戊酸(KMV)作为单一节点,实现了2MBA产量为1817.03±103.73毫克/升,比初始单培养菌株提高了28倍,报道的最高产率为0.091克/克葡萄糖。这项工作证明了合成菌群和模型指导的途径优化对于提高高价值产品的有效性,这是一种可应用于其他有价值代谢物生产的通用策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4eb9/12165103/b2f3bf6fec30/ADVS-12-2416272-g001.jpg

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