Foroutan Amir Hossein, Salehi-Mazandarani Sadra, Lotfi-Shahreza Maryam, Nikpour Parvaneh
Department of Computer Engineering, Shahreza Campus, University of Isfahan, Isfahan, Iran.
Department of Genetics and Molecular Biology, Faculty of Medicine, Isfahan University of Medical Sciences, Isfahan, Iran.
Data Brief. 2025 Jun 2;61:111724. doi: 10.1016/j.dib.2025.111724. eCollection 2025 Aug.
Circular RNAs (circRNAs) are a type of RNAs that play crucial roles in various biological processes. Their outstanding properties such as tissue-specific expression and high resistance to exonuclease degradation make them attractive for research. However, a comprehensive analysis tool for analyzing circRNA data is still required. Here, we present CircPac, a newly developed web-based toolset that searches databases like circBase, circBank, and circRNADisease and organizes data to provide and visualize circRNAs information. Our toolset was created using the Python programming language and its libraries, such as pandas, seaborn, and the Django framework. CircPac enables users to unify the circRNA IDs and subsequently perform various bioinformatic analyses. These analyses include retrieving basic circRNA information, identifying target miRNAs, and analyzing circRNA expression changes in various diseases. Additionally, this toolset generates ready-to-publish figures of circRNA-miRNA interactions and circRNAs expression changes in diseases. CircPac is freely accessible (at https://www.circpac.ir) and offers a user-friendly platform for biologists to efficiently conduct and visualize circRNA data analyses in an appropriate format.
环状RNA(circRNAs)是一类在各种生物学过程中发挥关键作用的RNA。它们具有诸如组织特异性表达和对外切核酸酶降解的高抗性等突出特性,这使得它们成为研究的热点。然而,仍然需要一种用于分析circRNA数据的综合分析工具。在此,我们介绍CircPac,这是一种新开发的基于网络的工具集,它可以搜索circBase、circBank和circRNADisease等数据库,并整理数据以提供和可视化circRNA信息。我们的工具集是使用Python编程语言及其库(如pandas、seaborn和Django框架)创建的。CircPac使用户能够统一circRNA ID,随后进行各种生物信息学分析。这些分析包括检索circRNA的基本信息、识别靶标miRNA以及分析circRNA在各种疾病中的表达变化。此外,该工具集还能生成可直接发表的circRNA与miRNA相互作用以及circRNA在疾病中表达变化的图表。CircPac可免费访问(网址为https://www.circpac.ir),为生物学家提供了一个用户友好的平台,以便他们以合适的格式高效地进行和可视化circRNA数据分析。