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circRNADisease v2.0:一个经过更新的高质量实验支持的 circRNA-疾病关联资源。

circRNADisease v2.0: an updated resource for high-quality experimentally supported circRNA-disease associations.

机构信息

Beijing Neurosurgical Institute, Capital Medical University, Beijing 100070, China.

Beijing Tiantan Hospital, Capital Medical University, Beijing 100070, China.

出版信息

Nucleic Acids Res. 2024 Jan 5;52(D1):D1193-D1200. doi: 10.1093/nar/gkad949.

Abstract

circRNADisease v2.0 is an enhanced and reliable database that offers experimentally verified relationships between circular RNAs (circRNAs) and various diseases. It is accessible at http://cgga.org.cn/circRNADisease/ or http://cgga.org.cn:9091/circRNADisease/. The database currently includes 6998 circRNA-disease entries across multiple species, representing a remarkable 19.77-fold increase compared to the previous version. This expansion consists of a substantial rise in the number of circRNAs (from 330 to 4246), types of diseases (from 48 to 330) and covered species (from human only to 12 species). Furthermore, a new section has been introduced in the database, which collects information on circRNA-associated factors (genes, proteins and microRNAs), molecular mechanisms (molecular pathways), biological functions (proliferation, migration, invasion, etc.), tumor and/or cell line and/or patient-derived xenograft (PDX) details, and prognostic evidence in diseases. In addition, we identified 7 159 865 relationships between mutations and circRNAs among 30 TCGA cancer types. Due to notable enhancements and extensive data expansions, the circRNADisease 2.0 database has become an invaluable asset for both clinical practice and fundamental research. It enables researchers to develop a more comprehensive understanding of how circRNAs impact complex diseases.

摘要

circRNADisease v2.0 是一个经过增强且可靠的数据库,提供了经过实验验证的环状 RNA(circRNA)与各种疾病之间的关系。可通过以下网址访问:http://cgga.org.cn/circRNADisease/或 http://cgga.org.cn:9091/circRNADisease/。该数据库目前包含多个物种的 6998 个 circRNA-疾病条目,与上一版本相比,增加了 19.77 倍。这种扩展包括 circRNA(从 330 个增加到 4246 个)、疾病类型(从 48 种增加到 330 种)和涵盖的物种(从仅人类扩展到 12 个物种)数量的大幅增加。此外,数据库中引入了一个新的部分,收集了与 circRNA 相关的因子(基因、蛋白质和 microRNA)、分子机制(分子途径)、生物功能(增殖、迁移、侵袭等)、肿瘤和/或细胞系和/或患者来源异种移植(PDX)详细信息以及疾病的预后证据。此外,我们在 30 种 TCGA 癌症类型中鉴定出了 7159865 个突变与 circRNA 之间的关系。由于显著的增强和广泛的数据扩展,circRNADisease 2.0 数据库已成为临床实践和基础研究的宝贵资源。它使研究人员能够更全面地了解 circRNA 如何影响复杂疾病。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c1b/10767896/06ab0dfad27b/gkad949figgra1.jpg

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