• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

circRNADisease v2.0:一个经过更新的高质量实验支持的 circRNA-疾病关联资源。

circRNADisease v2.0: an updated resource for high-quality experimentally supported circRNA-disease associations.

机构信息

Beijing Neurosurgical Institute, Capital Medical University, Beijing 100070, China.

Beijing Tiantan Hospital, Capital Medical University, Beijing 100070, China.

出版信息

Nucleic Acids Res. 2024 Jan 5;52(D1):D1193-D1200. doi: 10.1093/nar/gkad949.

DOI:10.1093/nar/gkad949
PMID:37897359
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10767896/
Abstract

circRNADisease v2.0 is an enhanced and reliable database that offers experimentally verified relationships between circular RNAs (circRNAs) and various diseases. It is accessible at http://cgga.org.cn/circRNADisease/ or http://cgga.org.cn:9091/circRNADisease/. The database currently includes 6998 circRNA-disease entries across multiple species, representing a remarkable 19.77-fold increase compared to the previous version. This expansion consists of a substantial rise in the number of circRNAs (from 330 to 4246), types of diseases (from 48 to 330) and covered species (from human only to 12 species). Furthermore, a new section has been introduced in the database, which collects information on circRNA-associated factors (genes, proteins and microRNAs), molecular mechanisms (molecular pathways), biological functions (proliferation, migration, invasion, etc.), tumor and/or cell line and/or patient-derived xenograft (PDX) details, and prognostic evidence in diseases. In addition, we identified 7 159 865 relationships between mutations and circRNAs among 30 TCGA cancer types. Due to notable enhancements and extensive data expansions, the circRNADisease 2.0 database has become an invaluable asset for both clinical practice and fundamental research. It enables researchers to develop a more comprehensive understanding of how circRNAs impact complex diseases.

摘要

circRNADisease v2.0 是一个经过增强且可靠的数据库,提供了经过实验验证的环状 RNA(circRNA)与各种疾病之间的关系。可通过以下网址访问:http://cgga.org.cn/circRNADisease/或 http://cgga.org.cn:9091/circRNADisease/。该数据库目前包含多个物种的 6998 个 circRNA-疾病条目,与上一版本相比,增加了 19.77 倍。这种扩展包括 circRNA(从 330 个增加到 4246 个)、疾病类型(从 48 种增加到 330 种)和涵盖的物种(从仅人类扩展到 12 个物种)数量的大幅增加。此外,数据库中引入了一个新的部分,收集了与 circRNA 相关的因子(基因、蛋白质和 microRNA)、分子机制(分子途径)、生物功能(增殖、迁移、侵袭等)、肿瘤和/或细胞系和/或患者来源异种移植(PDX)详细信息以及疾病的预后证据。此外,我们在 30 种 TCGA 癌症类型中鉴定出了 7159865 个突变与 circRNA 之间的关系。由于显著的增强和广泛的数据扩展,circRNADisease 2.0 数据库已成为临床实践和基础研究的宝贵资源。它使研究人员能够更全面地了解 circRNA 如何影响复杂疾病。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c1b/10767896/a023d2c12a87/gkad949fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c1b/10767896/06ab0dfad27b/gkad949figgra1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c1b/10767896/ec49df241f3f/gkad949fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c1b/10767896/a023d2c12a87/gkad949fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c1b/10767896/06ab0dfad27b/gkad949figgra1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c1b/10767896/ec49df241f3f/gkad949fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c1b/10767896/a023d2c12a87/gkad949fig3.jpg

相似文献

1
circRNADisease v2.0: an updated resource for high-quality experimentally supported circRNA-disease associations.circRNADisease v2.0:一个经过更新的高质量实验支持的 circRNA-疾病关联资源。
Nucleic Acids Res. 2024 Jan 5;52(D1):D1193-D1200. doi: 10.1093/nar/gkad949.
2
CircR2Disease v2.0: An Updated Web Server for Experimentally Validated circRNA-disease Associations and Its Application.CircR2Disease v2.0:一个更新的实验验证的 circRNA-疾病关联的网络服务器及其应用。
Genomics Proteomics Bioinformatics. 2022 Jun;20(3):435-445. doi: 10.1016/j.gpb.2021.10.002. Epub 2021 Nov 29.
3
Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data.Lnc2Cancer 3.0:一个经过更新的实验支持的 lncRNA/circRNA 癌症关联资源,以及基于 RNA-seq 和 scRNA-seq 数据的网络工具。
Nucleic Acids Res. 2021 Jan 8;49(D1):D1251-D1258. doi: 10.1093/nar/gkaa1006.
4
CSCD2: an integrated interactional database of cancer-specific circular RNAs.CSCD2:一个癌症特异性环状 RNA 的综合交互数据库。
Nucleic Acids Res. 2022 Jan 7;50(D1):D1179-D1183. doi: 10.1093/nar/gkab830.
5
CircR2Cancer: a manually curated database of associations between circRNAs and cancers.环状 RNA 癌症数据库:circRNAs 与癌症关联的人工整理数据库。
Database (Oxford). 2020 Jan 1;2020. doi: 10.1093/database/baaa085.
6
CircNet 2.0: an updated database for exploring circular RNA regulatory networks in cancers.CircNet 2.0:一个用于探索癌症中环状 RNA 调控网络的更新数据库。
Nucleic Acids Res. 2022 Jan 7;50(D1):D93-D101. doi: 10.1093/nar/gkab1036.
7
CIRCpedia v2: An Updated Database for Comprehensive Circular RNA Annotation and Expression Comparison.CIRCpedia v2:一个全面的环状 RNA 注释和表达比较的更新数据库。
Genomics Proteomics Bioinformatics. 2018 Aug;16(4):226-233. doi: 10.1016/j.gpb.2018.08.001. Epub 2018 Aug 29.
8
ncR2Met (lncR2metasta v2.0): An updated database for experimentally supported ncRNAs during cancer metastatic events.ncR2Met(lncR2metasta v2.0):一个在癌症转移事件中具有实验支持的 ncRNAs 的更新数据库。
Genomics. 2023 Mar;115(2):110569. doi: 10.1016/j.ygeno.2023.110569. Epub 2023 Feb 2.
9
CircFunBase: a database for functional circular RNAs.CircFunBase:一个用于功能环状 RNA 的数据库。
Database (Oxford). 2019 Jan 1;2019:baz003. doi: 10.1093/database/baz003.
10
circMine: a comprehensive database to integrate, analyze and visualize human disease-related circRNA transcriptome.circMine:一个综合数据库,用于整合、分析和可视化人类疾病相关的 circRNA 转录组。
Nucleic Acids Res. 2022 Jan 7;50(D1):D83-D92. doi: 10.1093/nar/gkab809.

引用本文的文献

1
In Silico Identification of circPIM1/miR-16-5p/miR-195-5p/PIM1 Feed-Forward Loop in Recurrent Grade 2 Meningioma.复发性二级脑膜瘤中circPIM1/miR-16-5p/miR-195-5p/PIM1前馈环的计算机模拟鉴定
Int J Mol Sci. 2025 Aug 26;26(17):8263. doi: 10.3390/ijms26178263.
2
Online Databases in Circular RNAs.环状RNA中的在线数据库
Adv Exp Med Biol. 2025;1485:43-57. doi: 10.1007/978-981-96-9428-0_4.
3
circGPAcorr: an integrative tool for functional annotation of circular RNAs using expression data.circGPAcorr:一种利用表达数据对环状RNA进行功能注释的综合工具。

本文引用的文献

1
Impact of U2AF1 mutations on circular RNA expression in myelodysplastic neoplasms.U2AF1 突变对骨髓增生异常肿瘤环状 RNA 表达的影响。
Leukemia. 2023 May;37(5):1113-1125. doi: 10.1038/s41375-023-01866-4. Epub 2023 Mar 15.
2
A guide to naming eukaryotic circular RNAs.真核环状 RNA 命名指南。
Nat Cell Biol. 2023 Jan;25(1):1-5. doi: 10.1038/s41556-022-01066-9.
3
EWSR1-induced circNEIL3 promotes glioma progression and exosome-mediated macrophage immunosuppressive polarization via stabilizing IGF2BP3.EWSR1 诱导的 circNEIL3 通过稳定 IGF2BP3 促进神经胶质瘤的进展和外泌体介导的巨噬细胞免疫抑制极化。
BioData Min. 2025 Aug 1;18(1):50. doi: 10.1186/s13040-025-00468-3.
4
CircPac: A web-based analysis toolset for exploring circular RNA data.CircPac:一个用于探索环状RNA数据的基于网络的分析工具集。
Data Brief. 2025 Jun 2;61:111724. doi: 10.1016/j.dib.2025.111724. eCollection 2025 Aug.
5
Utilizing RNA-seq data in monotone iterative generalized linear model to elevate prior knowledge quality of the circRNA-miRNA-mRNA regulatory axis.在单调迭代广义线性模型中利用RNA测序数据提高环状RNA-微小RNA-信使RNA调控轴的先验知识质量。
BMC Bioinformatics. 2025 May 27;26(1):139. doi: 10.1186/s12859-025-06161-w.
6
Identification of biomarkers of male infertility through the circRNA expression profiling of seminal plasma.通过精浆环状RNA表达谱鉴定男性不育的生物标志物。
J Biomed Res. 2025 May 20;39(4):367-381. doi: 10.7555/JBR.38.20240192.
7
m6A2Circ: A comprehensive database for decoding the regulatory relationship between m6A modification and circular RNA.m6A2Circ:一个用于解码m6A修饰与环状RNA之间调控关系的综合数据库。
Comput Struct Biotechnol J. 2025 Feb 21;27:813-820. doi: 10.1016/j.csbj.2025.02.018. eCollection 2025.
8
Comprehensive analysis of non-coding RNA-mediated endothelial cell-specific regulatory circuits in coronary artery disease risk.冠状动脉疾病风险中非编码RNA介导的内皮细胞特异性调控回路的综合分析。
Front Genet. 2025 Feb 21;16:1559798. doi: 10.3389/fgene.2025.1559798. eCollection 2025.
9
Hsa_circ_0002301 inhibits ferroptosis in gastric cancer by encoding the de novo protein HECTD1-463aa.Hsa_circ_0002301通过编码新生蛋白HECTD1-463aa抑制胃癌中的铁死亡。
J Transl Med. 2025 Feb 28;23(1):250. doi: 10.1186/s12967-025-06226-7.
10
RNA sequence analysis landscape: A comprehensive review of task types, databases, datasets, word embedding methods, and language models.RNA序列分析全景:任务类型、数据库、数据集、词嵌入方法及语言模型的全面综述
Heliyon. 2025 Jan 6;11(2):e41488. doi: 10.1016/j.heliyon.2024.e41488. eCollection 2025 Jan 30.
Mol Cancer. 2022 Jan 14;21(1):16. doi: 10.1186/s12943-021-01485-6.
4
Circular RNA ZNF609/CKAP5 mRNA interaction regulates microtubule dynamics and tumorigenicity.环状 RNA ZNF609/CKAP5 mRNA 相互作用调控微管动力学和致瘤性。
Mol Cell. 2022 Jan 6;82(1):75-89.e9. doi: 10.1016/j.molcel.2021.11.032. Epub 2021 Dec 22.
5
The Human Disease Ontology 2022 update.人类疾病本体 2022 更新版。
Nucleic Acids Res. 2022 Jan 7;50(D1):D1255-D1261. doi: 10.1093/nar/gkab1063.
6
CircNEIL3 regulatory loop promotes pancreatic ductal adenocarcinoma progression via miRNA sponging and A-to-I RNA-editing.环状 NEIL3 通过 miRNA 海绵作用和 A-to-I RNA 编辑促进胰腺导管腺癌进展的调控环路。
Mol Cancer. 2021 Mar 9;20(1):51. doi: 10.1186/s12943-021-01333-7.
7
Circular RNA-encoded oncogenic E-cadherin variant promotes glioblastoma tumorigenicity through activation of EGFR-STAT3 signalling.环状 RNA 编码的致癌性 E-钙黏蛋白变体通过激活 EGFR-STAT3 信号通路促进胶质母细胞瘤的致瘤性。
Nat Cell Biol. 2021 Mar;23(3):278-291. doi: 10.1038/s41556-021-00639-4. Epub 2021 Mar 4.
8
Chinese Glioma Genome Atlas (CGGA): A Comprehensive Resource with Functional Genomic Data from Chinese Glioma Patients.中国脑胶质瘤基因组图谱(CGGA):来自中国脑胶质瘤患者的功能基因组数据的综合资源。
Genomics Proteomics Bioinformatics. 2021 Feb;19(1):1-12. doi: 10.1016/j.gpb.2020.10.005. Epub 2021 Mar 2.
9
Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression.环状 RNA 与 RNA 结合蛋白相互作用的转录组特征揭示了其对环状 RNA 生成和癌症通路表达的影响。
Genome Med. 2020 Dec 7;12(1):112. doi: 10.1186/s13073-020-00812-8.
10
circVAR database: genome-wide archive of genetic variants for human circular RNAs.circVAR 数据库:人类环状 RNA 遗传变异的全基因组档案。
BMC Genomics. 2020 Oct 29;21(1):750. doi: 10.1186/s12864-020-07172-y.