Sahin Sibel Melisa, Saticioglu Izzet Burcin, Duman Muhammed, Ay Hilal
Department of Molecular Biology and Genetics, Faculty of Arts and Science, Yildiz Technical University, Istanbul 34220, Turkiye.
Department of Aquatic Animal Diseases, Faculty of Veterinary Medicine, Bursa Uludag University, Bursa 16059, Turkiye.
Int J Syst Evol Microbiol. 2025 Jul;75(7). doi: 10.1099/ijsem.0.006856.
Three novel actinobacterial strains, H27-S2, H34-AA3 and H34-S5, were isolated from soil samples collected on Horseshoe Island, Antarctica, as part of an effort to discover new species with industrial and pharmaceutical relevance. A genome-based comparative analysis was conducted to characterize the strains. The pairwise comparisons of the 16S rRNA gene sequences confirmed their affiliation with the genus , with the highest sequence identity values of 99.7-99.8% with NBRC 13429. However, genome-based taxonomic analyses, including digital DNA-DNA hybridization and average nucleotide identity analyses, confirmed that these strains represent a novel species within the genus . A comprehensive genome annotation revealed that the strains possess extensive biosynthetic capabilities, particularly for secondary metabolites, antimicrobial resistance mechanisms, heavy metal resistance genes and stress adaptation systems for survival in cold environments. Their metabolic potential includes aromatic compound degradation, indicating a promising role in bioremediation, while their secondary metabolite gene clusters suggest potential applications in pharmaceutical and clinical research. Given their ability to thrive in extreme Antarctic conditions, these strains may contribute to advancements in cryotechnology and enzyme production for industrial applications. Based on phylogenomic analyses, these strains represent a novel species, for which the name sp. nov. is proposed. The type strain is H27-S2 (=DSM 114983=CGMCC 4.7867).
从南极洲马蹄岛采集的土壤样本中分离出三株新型放线菌菌株,即H27-S2、H34-AA3和H34-S5,这是发现具有工业和制药相关性新物种工作的一部分。进行了基于基因组的比较分析以表征这些菌株。16S rRNA基因序列的成对比较证实它们属于该属,与NBRC 13429的最高序列同一性值为99.7-99.8%。然而,基于基因组的分类分析,包括数字DNA-DNA杂交和平均核苷酸同一性分析,证实这些菌株代表该属内的一个新物种。全面的基因组注释表明,这些菌株具有广泛的生物合成能力,特别是对于次级代谢产物、抗菌抗性机制、重金属抗性基因以及在寒冷环境中生存的应激适应系统。它们的代谢潜力包括芳香化合物降解,表明在生物修复中具有潜在作用,而其次级代谢产物基因簇提示在制药和临床研究中的潜在应用。鉴于它们在极端南极条件下茁壮成长的能力,这些菌株可能有助于推动低温技术和工业应用酶生产的进步。基于系统基因组学分析,这些菌株代表一个新物种,为此提出新物种名 sp. nov.。模式菌株为H27-S2(=DSM 114983=CGMCC 4.7867)。