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使用Swin UNETR对多模态MRI脑肿瘤患者的总生存预测

OVERALL SURVIVAL PREDICTION OF BRAIN TUMOR PATIENTS WITH MULTIMODAL MRI USING SWIN UNETR.

作者信息

Kim Gihyeon, Xing Fangxu, Kong Hyoun-Joong, Santarnecchi Emiliano, Shih Helen A, Bortfeld Thomas, El Fakhri Georges, Liu Xiaofeng, Choi Jang-Hwan, Woo Jonghye

机构信息

Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.

Ewha Womans University, Seoul, Korea.

出版信息

Proc IEEE Int Symp Biomed Imaging. 2025 Apr;2025. doi: 10.1109/isbi60581.2025.10981128. Epub 2025 May 12.

DOI:10.1109/isbi60581.2025.10981128
PMID:40809516
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12345447/
Abstract

Accurate prediction of glioblastoma patient survival can significantly aid in personalized treatment planning. While pre-operative multimodal magnetic resonance imaging (MRI) offers complementary information, current methods are constrained by relatively limited data and largely rely on hand-crafted features extracted from segmentation results. To address these issues, in this work, we propose a data-efficient multi-task framework to take advantage of hierarchical segmentation features within advanced Swin UNETR for survival prediction. By integrating multi-scale features, we are able to capture detailed spatial information and global context, while employing the shifted window mechanism to maintain computational efficiency and scalability for 3D volumes. We further alleviate survival data scarcity through segmentation pre-training, while the features are fine-tuned to align with the survival prediction task and refined by statistical F-values. In addition, age information is incorporated alongside the extracted features to enhance survival prediction performance. Through comprehensive evaluations on the BraTS dataset, we demonstrate that our model achieves superior segmentation accuracy and state-of-the-art survival prediction performance, offering a robust solution for clinical prognosis in glioblastoma patients.

摘要

准确预测胶质母细胞瘤患者的生存期能够显著有助于个性化治疗方案的制定。虽然术前多模态磁共振成像(MRI)可提供补充信息,但目前的方法受到相对有限的数据限制,并且很大程度上依赖于从分割结果中提取的手工特征。为了解决这些问题,在本研究中,我们提出了一种数据高效的多任务框架,以利用先进的Swin UNETR中的分层分割特征进行生存期预测。通过整合多尺度特征,我们能够捕捉详细的空间信息和全局上下文,同时采用移位窗口机制来保持对三维体积的计算效率和可扩展性。我们通过分割预训练进一步缓解生存数据稀缺问题,同时对特征进行微调以使其与生存预测任务对齐,并通过统计F值进行优化。此外,将年龄信息与提取的特征一起纳入,以提高生存预测性能。通过对BraTS数据集的全面评估,我们证明我们的模型实现了卓越的分割精度和领先的生存预测性能,为胶质母细胞瘤患者的临床预后提供了一个强大的解决方案。

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本文引用的文献

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Leveraging segmentation-guided spatial feature embedding for overall survival prediction in glioblastoma with multimodal magnetic resonance imaging.利用分割引导的空间特征嵌入进行多模态磁共振成像胶质母细胞瘤的总生存期预测。
Comput Methods Programs Biomed. 2024 Oct;255:108338. doi: 10.1016/j.cmpb.2024.108338. Epub 2024 Jul 18.
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Context aware deep learning for brain tumor segmentation, subtype classification, and survival prediction using radiology images.基于放射影像的脑肿瘤分割、亚型分类和生存预测的上下文感知深度学习
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Brain Tumor Segmentation Using an Ensemble of 3D U-Nets and Overall Survival Prediction Using Radiomic Features.
使用3D U-Net集成进行脑肿瘤分割以及使用放射组学特征进行总生存预测
Front Comput Neurosci. 2020 Apr 8;14:25. doi: 10.3389/fncom.2020.00025. eCollection 2020.
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Brain Tumor Segmentation and Survival Prediction Using Multimodal MRI Scans With Deep Learning.使用深度学习的多模态磁共振成像扫描进行脑肿瘤分割与生存预测
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