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菌株的表型、化学分类学和基于基因组的分类:两个拟议的新物种,[物种名称1] 新种和[物种名称2] 新种

Phenotypic, Chemotaxonomic, and Genome-Based Classification of Strains: Two Proposed Novel Species, sp. nov. and sp. nov.

作者信息

Wdowiak-Wróbel Sylwia, Włodarczyk-Ciekańska Karolina, Marek-Kozaczuk Monika, Palusińska-Szysz Marta, Koper Piotr, Wielbo Jerzy

机构信息

Department of Genetics and Microbiology, Maria Curie-Sklodowska University, Akademicka 19 Str., 20-033 Lublin, Poland.

Independent Laboratory of Cancer Diagnostics and Immunology, Faculty of Medicine, Medical University of Lublin, Chodźki 1 (Collegium Universum), 20-093 Lublin, Poland.

出版信息

Biology (Basel). 2025 Aug 8;14(8):1024. doi: 10.3390/biology14081024.

Abstract

The taxonomic status of two bacterial strains, KW56 and 2063, isolated from root nodules of (Spanish broom), was investigated using a polyphasic approach. Both isolates belong to the genus , yet exhibit significant genotypic and phenotypic differences from all currently described species. Whole-genome comparisons revealed that strain KW56 is most closely related to PETP 02, while strain 2063 is related to strains STM 196 and 29-15. However, digital DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI) values between the new isolates and their closest relatives were below established species delineation thresholds, supporting their recognition as novel species. Phenotypic analyses confirmed morphological and growth characteristics typical for , while also revealing several discriminatory physiological traits. Fatty acid profiling showed that cyclopropyl 19:0 was the major fatty acid in both strains, though each exhibited a unique fatty acid composition. Chemotaxonomic markers included 3-OH 14:0, a19:1, and 21:0 for strain KW56, and 3-OH 14:0, 3-OH 17:0, and 3-OH 18:0 for strain 2063. Based on the genomic, phenotypic, and chemotaxonomic data, we propose that strains KW56 and 2063 represent two novel species, for which the names sp. nov. (DSM 113831) and sp. nov. (DSM 113830) are proposed.

摘要

采用多相分类法对从西班牙金雀儿根瘤中分离出的两株细菌KW56和2063的分类地位进行了研究。这两株分离菌均属于[属名]属,但与目前已描述的所有物种相比,在基因型和表型上存在显著差异。全基因组比较显示,菌株KW56与[菌株名]PETP 02关系最为密切,而菌株2063与[菌株名]菌株STM 196和29 - 15相关。然而,新分离菌株与其最接近亲缘种之间的数字DNA - DNA杂交(dDDH)和平均核苷酸同一性(ANI)值低于已确定的物种界定阈值,支持将它们认定为新物种。表型分析证实了[属名]属典型的形态和生长特征,同时也揭示了一些具有鉴别性的生理特性。脂肪酸谱分析表明,环丙基19:0是两株菌株中的主要脂肪酸,不过每株菌株都呈现出独特的脂肪酸组成。化学分类标记方面,菌株KW56包括3 - OH 14:0、a19:1和21:0,菌株2063包括3 - OH 14:0、3 - OH 17:0和3 - OH 18:0。基于基因组、表型和化学分类数据,我们提议菌株KW56和2063代表两个新物种,分别命名为[新物种名1] sp. nov.(DSM 113831)和[新物种名2] sp. nov.(DSM 113830)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5427/12383984/aadc9d634880/biology-14-01024-g001.jpg

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