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新种红藻海栖菌和新种贝氏海栖菌,从海洋红藻中分离得到。

Aquimarina rhodophyticola sp. nov. and Aquimarina besae sp. nov., Isolated from Marine Red Algae.

作者信息

Kim Jeong Min, Choi Byeong Jun, Bayburt Hülya, Han Dong Min, Jeon Che Ok

机构信息

Department of Life Science, Chung-Ang University, 84, HeukSeok-Ro, Dongjak-Gu, Seoul, 06974, Republic of Korea.

出版信息

Curr Microbiol. 2025 Sep 16;82(11):504. doi: 10.1007/s00284-025-04504-7.

Abstract

Two Gram-negative, oxidase- and catalase-positive, non-motile, rod-shaped aerobic bacteria, designated strains W85ᵀ and SS2-1ᵀ, were isolated from marine red algae. Strain W85ᵀ grew optimally at 30 °C, pH 7.0, and 4.0% (w/v) NaCl, while strain SS2-1ᵀ grew optimally at 25-30 °C, pH 7.0, and 2.0-3.0% NaCl. Both strains contained menaquinone-6 as the sole respiratory quinone and shared major fatty acids, including iso-C, summed feature 9 (C 10-methyl and/or iso-C ω9c), and iso-C G, with iso-C 3-OH additionally present in strain W85ᵀ. The major polar lipids were phosphatidylethanolamine and diphosphatidylglycerol. The complete genomes of strains W85ᵀ (3.67 Mb, 3,151 genes) and SS2-1ᵀ (5.14 Mb, 4,564 genes) had a DNA G + C content of 34.1%. Genome annotation revealed that strain SS2-1ᵀ harbored more carbohydrate-active enzymes (129 genes) than W85ᵀ (60 genes), suggesting enhanced polysaccharide-degrading capacity. Ecological distribution analysis indicated that strains W85ᵀ and SS2-1ᵀ occupy distinct ecological niches, implying potential functional specialization. Both strains shared 95.0% 16S rRNA gene similarity, 71.9% average nucleotide identity (ANI), and 18.5% digital DNA-DNA hybridization (dDDH), all below species-level thresholds. Phylogenetic analyses based on 16S rRNA gene and whole-genome sequences confirmed that strains W85ᵀ and SS2-1ᵀ form distinct lineages within the genus Aquimarina. Furthermore, ANI and dDDH values between each strain and other type strains were also well below the species delineation thresholds. Based on phenotypic, chemotaxonomic, genomic, and ecological characteristics, strains W85ᵀ and SS2-1ᵀ are proposed as Aquimarina rhodophyticola sp. nov. (W85ᵀ = KACC 23858ᵀ = DSM 119937ᵀ) and Aquimarina besae sp. nov. (SS2-1ᵀ = KACC 23859ᵀ = DSM 119931ᵀ), respectively.

摘要

从海洋红藻中分离出两株革兰氏阴性、氧化酶和过氧化氢酶阳性、无运动性、杆状需氧细菌,分别命名为W85ᵀ和SS2-1ᵀ菌株。W85ᵀ菌株在30℃、pH 7.0和4.0%(w/v)NaCl条件下生长最佳,而SS2-1ᵀ菌株在25 - 30℃、pH 7.0和2.0 - 3.0% NaCl条件下生长最佳。两株菌株均以甲基萘醌-6作为唯一呼吸醌,并共享主要脂肪酸,包括异-C、总和特征9(C₁₀-甲基和/或异-C ω9c)以及异-C G,W85ᵀ菌株还额外含有异-C₃-OH。主要极性脂质为磷脂酰乙醇胺和二磷脂酰甘油。W85ᵀ菌株(3.67 Mb,3151个基因)和SS2-1ᵀ菌株(5.14 Mb,4564个基因)的完整基因组DNA G + C含量为34.1%。基因组注释显示,SS2-1ᵀ菌株所含的碳水化合物活性酶(129个基因)比W85ᵀ菌株(60个基因)多,表明其多糖降解能力增强。生态分布分析表明,W85ᵀ和SS2-1ᵀ菌株占据不同的生态位,暗示其潜在的功能特化。两株菌株的16S rRNA基因相似度为95.0%,平均核苷酸同一性(ANI)为71.9%,数字DNA-DNA杂交(dDDH)为18.5%,均低于物种水平阈值。基于16S rRNA基因和全基因组序列的系统发育分析证实,W85ᵀ和SS2-1ᵀ菌株在Aquimarina属内形成不同的谱系。此外,各菌株与其他模式菌株之间的ANI和dDDH值也远低于物种划分阈值。基于表型、化学分类、基因组和生态特征,W85ᵀ和SS2-1ᵀ菌株分别被提议为新种红藻海栖菌(Aquimarina rhodophyticola sp. nov.)(W85ᵀ = KACC 23858ᵀ = DSM 119937ᵀ)和贝氏海栖菌(Aquimarina besae sp. nov.)(SS2-1ᵀ = KACC 23859ᵀ = DSM 119931ᵀ)。

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