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小鼠“逆转录病毒样”多基因家族的基因组分布模式和序列异质性

Patterns of genomic distribution and sequence heterogeneity of a murine "retrovirus-like" multigene family.

作者信息

Keshet E, Itin A

出版信息

J Virol. 1982 Jul;43(1):50-8. doi: 10.1128/JVI.43.1.50-58.1982.

DOI:10.1128/JVI.43.1.50-58.1982
PMID:6287016
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC256095/
Abstract

The mouse genome contains over 100 copies of a dispersed gene family known as "virus-like" genes encoding 30S RNA (VL30). Although they do not share nucleotide sequence homology with known retroviruses, these genetic elements are distinguished by several "retrovirus-like" features, notably, the capacity of the 30S RNA transcripts of these genes to be encapsidated by c-type virions and the transmissibility of VL30 information to other cells via pseudovirion infection. Using VL30 DNA units, cloned from the BALB/c mouse embryonic gene library, we have recently shown that VL30 DNA units share basic structural features with retrovirus proviruses. To shed light on the relatedness of VL30 information to endogenous proviruses and possibly other genetic elements, we extended our previous studies concerning genomic distribution patterns of VL30 elements and patterns of sequence heterogeneity among VL30 units. The following observations were made: (i) VL30 units were distributed among different mouse chromosomes; (ii) distribution patterns of VL30 units markedly differed among mouse strains; (iii) there was constancy of VL30 restriction patterns in different tissues; (iv) a high degree of sequence divergence existed among different VL30 units cloned from the same embryo; and (v) VL30 units were heterogeneous with respect to the state of DNA methylation. The results are discussed in terms of the possible modes of evolution of this multigene family.

摘要

小鼠基因组包含一个称为“病毒样”基因的分散基因家族的100多个拷贝,这些基因编码30S RNA(VL30)。尽管它们与已知逆转录病毒没有核苷酸序列同源性,但这些遗传元件具有几个“逆转录病毒样”特征,特别是这些基因的30S RNA转录本能够被c型病毒体包裹,以及VL30信息通过假病毒感染传递到其他细胞的能力。利用从BALB/c小鼠胚胎基因文库中克隆的VL30 DNA单位,我们最近发现VL30 DNA单位与逆转录病毒前病毒具有基本的结构特征。为了阐明VL30信息与内源性前病毒以及可能的其他遗传元件之间的相关性,我们扩展了之前关于VL30元件基因组分布模式和VL30单位之间序列异质性模式的研究。得到了以下观察结果:(i)VL30单位分布在不同的小鼠染色体上;(ii)VL30单位的分布模式在不同小鼠品系之间明显不同;(iii)不同组织中VL30限制模式具有稳定性;(iv)从同一胚胎克隆的不同VL单位之间存在高度的序列差异;(v)VL30单位在DNA甲基化状态方面是异质的。我们根据这个多基因家族可能的进化模式对结果进行了讨论。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2746/256095/2e2b198ae785/jvirol00154-0069-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2746/256095/52bdc0db272d/jvirol00154-0065-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2746/256095/524d98c51564/jvirol00154-0066-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2746/256095/ea6b190521b8/jvirol00154-0067-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2746/256095/2c434c023934/jvirol00154-0068-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2746/256095/2e2b198ae785/jvirol00154-0069-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2746/256095/52bdc0db272d/jvirol00154-0065-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2746/256095/524d98c51564/jvirol00154-0066-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2746/256095/ea6b190521b8/jvirol00154-0067-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2746/256095/2c434c023934/jvirol00154-0068-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2746/256095/2e2b198ae785/jvirol00154-0069-a.jpg

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本文引用的文献

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Intracisternal A-particle genes in Mus musculus: a conserved family of retrovirus-like elements.小家鼠脑池内A颗粒基因:一个保守的类逆转录病毒元件家族。
Mol Cell Biol. 1981 Mar;1(3):216-27. doi: 10.1128/mcb.1.3.216-227.1981.
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Nature. 1981 Jan 1;289(5793):83-5. doi: 10.1038/289083a0.
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Nucleotide sequence analysis of the long terminal repeat of murine virus-like DNA (VL30) and its adjacent sequences: resemblance to retrovirus proviruses.鼠类病毒样DNA(VL30)长末端重复序列及其相邻序列的核苷酸序列分析:与逆转录病毒前病毒的相似性。
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Structure and expression of mouse VL30 genes.小鼠VL30基因的结构与表达
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DNA methylation at a CCGG sequence in the large intron of the rabbit beta-globin gene: tissue-specific variations.兔β-珠蛋白基因大内含子中CCGG序列处的DNA甲基化:组织特异性变异
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