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1
Refined secondary structure models for the 16S and 23S ribosomal RNA of Escherichia coli.大肠杆菌16S和23S核糖体RNA的精细二级结构模型
Nucleic Acids Res. 1983 Nov 11;11(21):7263-86. doi: 10.1093/nar/11.21.7263.
2
DNA sequence of the 16S rRNA/23S rRNA intercistronic spacer of two rDNA operons of the archaebacterium Methanococcus vannielii.嗜甲烷球菌两个rDNA操纵子的16S rRNA/23S rRNA基因间间隔区的DNA序列。
Nucleic Acids Res. 1983 Nov 11;11(21):7537-44. doi: 10.1093/nar/11.21.7537.
3
Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs.大肠杆菌MRE 600 23S核糖体RNA的一级和二级结构。与玉米叶绿体23S rRNA以及小鼠和人类16S线粒体rRNA大部分区域的二级结构模型的比较。
Nucleic Acids Res. 1981 Sep 11;9(17):4303-24. doi: 10.1093/nar/9.17.4303.
4
Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes.来自大肠杆菌、玉米叶绿体以及人类和小鼠线粒体核糖体的大亚基核糖体RNA的二级结构。
Nucleic Acids Res. 1981 Jul 24;9(14):3287-306. doi: 10.1093/nar/9.14.3287.
5
An extension of the graph theoretical approach to predict the secondary structure of large RNAs: the complex of 16S and 23S rRNAs from E. coli as a case study.预测大型RNA二级结构的图论方法扩展：以大肠杆菌16S和23S rRNA复合物为例进行研究。
Comput Appl Biosci. 1989 Jul;5(3):211-8. doi: 10.1093/bioinformatics/5.3.211.
6
The rRNA operon from Zea mays chloroplasts: nucleotide sequence of 23S rDNA and its homology with E.coli 23S rDNA.玉米叶绿体的核糖体RNA操纵子：23S核糖体DNA的核苷酸序列及其与大肠杆菌23S核糖体DNA的同源性。
Nucleic Acids Res. 1981 Jun 25;9(12):2853-69. doi: 10.1093/nar/9.12.2853.
7
Extensions of the known sequences at the 3' and 5' ends of 23S ribosomal RNA from Escherichia coli, possible base pairing between these 23S RNA regions and 16S ribosomal RNA.
Nucleic Acids Res. 1976 Jul;3(7):1671-87. doi: 10.1093/nar/3.7.1671.
8
Correlation of the expansion segments in mammalian rRNA with the fine structure of the 80 S ribosome; a cryoelectron microscopic reconstruction of the rabbit reticulocyte ribosome at 21 A resolution.哺乳动物核糖体RNA中扩展片段与80S核糖体精细结构的相关性；兔网织红细胞核糖体在21埃分辨率下的冷冻电子显微镜重建。
J Mol Biol. 1998 Jun 5;279(2):403-21. doi: 10.1006/jmbi.1998.1804.
9
Additional Watson-Crick interactions suggest a structural core in large subunit ribosomal RNA.额外的沃森-克里克相互作用表明在大亚基核糖体RNA中存在一个结构核心。
J Biomol Struct Dyn. 1989 Aug;7(1):181-6. doi: 10.1080/07391102.1989.10507759.
10
Prediction of the recognition sites on 16S and 23S rRNAs from E. coli for the formation of 16S-23S rRNA complex.预测大肠杆菌16S和23S rRNA上形成16S - 23S rRNA复合物的识别位点。
J Biomol Struct Dyn. 1988 Dec;6(3):587-92. doi: 10.1080/07391102.1988.10506509.

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Evolution: Mitochondrial Ribosomes Across Species.进化：跨物种的线粒体核糖体。
Methods Mol Biol. 2023;2661:7-21. doi: 10.1007/978-1-0716-3171-3_2.
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Single-cell genomics unveils a canonical origin of the diverse mitochondrial genomes of euglenozoans.单细胞基因组学揭示了眼虫动物多样的线粒体基因组的典型起源。
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Structure of the large ribosomal subunit from human mitochondria.人线粒体大核糖体亚基的结构
Science. 2014 Nov 7;346(6210):718-722. doi: 10.1126/science.1258026. Epub 2014 Oct 2.
4
Structure of the yeast mitochondrial large ribosomal subunit.酵母线粒体大亚基的结构。
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Sequence studies on the soybean chloroplast 16S-23S rDNA spacer region : Comparison with other angiosperm sequences and proposal of a generalized RNA secondary structure model for the intergenic regions.大豆叶绿体 16S-23S rDNA 间隔区的序列研究：与其他被子植物序列的比较及基因间区通用 RNA 二级结构模型的提出。
Plant Mol Biol. 1987 Jan;10(1):65-82. doi: 10.1007/BF00014187.
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Examination of Genetic Relatedness of Marine Synechococcus spp. by Using Restriction Fragment Length Polymorphisms.运用限制片段长度多态性分析海洋聚球藻属（Synechococcus spp.）的遗传相关性。
Appl Environ Microbiol. 1988 Dec;54(12):3071-8. doi: 10.1128/aem.54.12.3071-3078.1988.
7
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J Mol Evol. 1997 Oct;45(4):397-411. doi: 10.1007/pl00006245.
8
Characterization of DbpA, an Escherichia coli DEAD box protein with ATP independent RNA unwinding activity.DbpA的特性研究，一种具有不依赖ATP的RNA解旋活性的大肠杆菌DEAD盒蛋白。
Nucleic Acids Res. 1997 Feb 1;25(3):537-45. doi: 10.1093/nar/25.3.537.
9
Nucleotide sequence of a crustacean 18S ribosomal RNA gene and secondary structure of eukaryotic small subunit ribosomal RNAs.一种甲壳类动物18S核糖体RNA基因的核苷酸序列及真核生物小亚基核糖体RNA的二级结构
Nucleic Acids Res. 1984 Dec 11;12(23):8749-68. doi: 10.1093/nar/12.23.8749.
10
On the evolutionary descent of organisms and organelles: a global phylogeny based on a highly conserved structural core in small subunit ribosomal RNA.论生物体和细胞器的进化谱系：基于小亚基核糖体RNA高度保守结构核心的全球系统发育学
Nucleic Acids Res. 1984 Jul 25;12(14):5837-52. doi: 10.1093/nar/12.14.5837.

本文引用的文献

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Sequence of the 16S Ribosomal RNA from Halobacterium volcanii, an Archaebacterium.古生菌嗜盐菌 16S 核糖体 RNA 序列。
Science. 1983 Aug 12;221(4611):656-9. doi: 10.1126/science.221.4611.656.
2
A model for the tertiary structure of mammalian mitochondrial transfer RNAs lacking the entire 'dihydrouridine' loop and stem.一种缺乏完整“二氢尿嘧啶”环和茎的哺乳动物线粒体转移核糖核酸三级结构模型。
EMBO J. 1983;2(8):1309-21. doi: 10.1002/j.1460-2075.1983.tb01586.x.
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Modification of 18 S rRNA in the 40 S ribosomal subunit of yeast with dimethyl sulfate.用硫酸二甲酯对酵母40S核糖体亚基中的18S rRNA进行修饰。
FEBS Lett. 1981 Nov 2;134(1):11-4. doi: 10.1016/0014-5793(81)80539-x.
4
Precise localization and nucleotide sequence of the two mouse mitochondrial rRNA genes and three immediately adjacent novel tRNA genes.两个小鼠线粒体rRNA基因以及三个紧邻的新tRNA基因的精确定位和核苷酸序列。
Cell. 1980 Nov;22(1 Pt 1):157-70. doi: 10.1016/0092-8674(80)90164-6.
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The primary and secondary structure of yeast 26S rRNA.酵母26S核糖体RNA的一级和二级结构。
Nucleic Acids Res. 1981 Dec 21;9(24):6935-52. doi: 10.1093/nar/9.24.6935.
6
The complete nucleotide sequence of 16S ribosomal RNA gene from tobacco chloroplasts.烟草叶绿体16S核糖体RNA基因的完整核苷酸序列。
Gene. 1982 Feb;17(2):213-8. doi: 10.1016/0378-1119(82)90074-9.
7
Secondary structure model for 23S ribosomal RNA.23S核糖体RNA的二级结构模型
Nucleic Acids Res. 1981 Nov 25;9(22):6167-89. doi: 10.1093/nar/9.22.6167.
8
Secondary structure comparisons between small subunit ribosomal RNA molecules from six different species.来自六个不同物种的小亚基核糖体RNA分子之间的二级结构比较。
Nucleic Acids Res. 1981 Aug 11;9(15):3621-40. doi: 10.1093/nar/9.15.3621.
9
Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes.来自大肠杆菌、玉米叶绿体以及人类和小鼠线粒体核糖体的大亚基核糖体RNA的二级结构。
Nucleic Acids Res. 1981 Jul 24;9(14):3287-306. doi: 10.1093/nar/9.14.3287.
10
The rRNA operon from Zea mays chloroplasts: nucleotide sequence of 23S rDNA and its homology with E.coli 23S rDNA.玉米叶绿体的核糖体RNA操纵子：23S核糖体DNA的核苷酸序列及其与大肠杆菌23S核糖体DNA的同源性。
Nucleic Acids Res. 1981 Jun 25;9(12):2853-69. doi: 10.1093/nar/9.12.2853.

大肠杆菌16S和23S核糖体RNA的精细二级结构模型

Refined secondary structure models for the 16S and 23S ribosomal RNA of Escherichia coli.

作者信息

Maly P, Brimacombe R

出版信息

Nucleic Acids Res. 1983 Nov 11;11(21):7263-86. doi: 10.1093/nar/11.21.7263.

DOI:10.1093/nar/11.21.7263
PMID:6359058
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC326482/
Abstract

The complete range of published sequences for ribosomal RNA (or rDNA), totalling well over 50,000 bases, has been used to derive refined models for the secondary structures of both 16S and 23S RNA from E. coli. Particular attention has been paid to resolving the differences between the various published secondary structures for these molecules. The structures are described in terms of 133 helical regions (45 for 16S RNA and 88 for 23S RNA). Of these, approximately 20 are still tentative or unconfirmed. A further 20 represent helical regions which definitely exist, but where the detailed base-pairing is still open to discussion. Over 90 of the helical regions are however now precisely established, at least to within one or two base pairs.

摘要

核糖体RNA（或rDNA）已发表序列的完整范围总计超过50000个碱基，已被用于推导大肠杆菌16S和23S RNA二级结构的优化模型。人们特别关注解决这些分子各种已发表二级结构之间的差异。这些结构是根据133个螺旋区域来描述的（16S RNA有45个，23S RNA有88个）。其中，约20个仍然是暂定的或未经证实的。另外20个代表肯定存在的螺旋区域，但具体的碱基配对仍有待讨论。然而，现在至少有90多个螺旋区域已精确确定，误差在一两个碱基对以内。