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使用统计标准筛选核酸序列中的潜在同源性。

Use of statistical criteria for screening potential homologies in nucleic acid sequences.

作者信息

Kanehisa M

出版信息

Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):203-13. doi: 10.1093/nar/12.1part1.203.

DOI:10.1093/nar/12.1part1.203
PMID:6694901
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC320997/
Abstract

We proposed a simple formula to assess the statistical significance of homologous segments found in comparison of two nucleic acid sequences (Goad and Kanehisa, Nucleic Acids Res. 10, 247-263, 1982). This paper clarifies the basic assumptions of the formula and its reliability is examined by Monte Carlo calculations. The results were satisfactory for random sequences. The formula is a useful measure for screening potentially interesting homologies and it can be implemented in any search algorithms. Examples are given for the screening procedure in the graphic display version of the Goad-Kanehisa algorithm.

摘要

我们提出了一个简单的公式，用于评估在比较两个核酸序列时发现的同源片段的统计学显著性（戈德和金久保，《核酸研究》10，247 - 263，1982年）。本文阐明了该公式的基本假设，并通过蒙特卡罗计算检验了其可靠性。对于随机序列，结果令人满意。该公式是筛选潜在有趣同源性的有用方法，可在任何搜索算法中实现。文中给出了戈德 - 金久保算法图形显示版本中筛选程序的示例。

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Use of statistical criteria for screening potential homologies in nucleic acid sequences.使用统计标准筛选核酸序列中的潜在同源性。
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):203-13. doi: 10.1093/nar/12.1part1.203.
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本文引用的文献

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An interactive graphics program for comparing and aligning nucleic acid and amino acid sequences.一个用于比较和比对核酸及氨基酸序列的交互式图形程序。
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Nucleic Acids Res. 1982 Jan 11;10(1):247-63. doi: 10.1093/nar/10.1.247.
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7
A high speed, high capacity homology matrix: zooming through SV40 and polyoma.一种高速、高容量的同源性矩阵：快速分析猿猴病毒40和多瘤病毒
Nucleic Acids Res. 1982 Aug 11;10(15):4765-82. doi: 10.1093/nar/10.15.4765.
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Nature. 1980 Jan 31;283(5746):445-53. doi: 10.1038/283445a0.
9
Los Alamos sequence analysis package for nucleic acids and proteins.洛斯阿拉莫斯核酸与蛋白质序列分析软件包。
Nucleic Acids Res. 1982 Jan 11;10(1):183-96. doi: 10.1093/nar/10.1.183.
10
A general method applicable to the search for similarities in the amino acid sequence of two proteins.一种适用于寻找两种蛋白质氨基酸序列相似性的通用方法。
J Mol Biol. 1970 Mar;48(3):443-53. doi: 10.1016/0022-2836(70)90057-4.