酿酒酵母第三条染色体上观察到的转录本与测序的开放阅读框之间的相关性。
Correlation between observed transcripts and sequenced ORFs of chromosome III of Saccharomyces cerevisiae.
作者信息
Tanaka S, Isono K
机构信息
Postgraduate School of Science and Technology, Kobe University, Japan.
出版信息
Nucleic Acids Res. 1993 Mar 11;21(5):1149-53. doi: 10.1093/nar/21.5.1149.
Abstract
Most of the 155 transcripts of the genes on chromosome III of S.cerevisiae that were identified by a series of Northern hybridization experiments (Yoshikawa, A. and Isono, K., Yeast 6, 383-401, 1990) have been correlated with the open reading frames (ORFs) deduced from the nucleotide sequence data for this chromosome (Oliver, S.G. et al., Nature 357, 38-46, 1992). This was performed by comparing the experimentally constructed physical map and the one produced from the nucleotide sequence data, and then the sizes and positions of observed transcripts and those of sequenced ORFs. The data thus provide information for possible products of the sequenced ORFs (genes) of chromosome III of S.cerevisiae as well as their likely levels of expression in vegetatively growing cells.
摘要
通过一系列Northern杂交实验鉴定出的酿酒酵母III号染色体上155个基因的转录本（吉川，A.和矶野，K.，《酵母》6，383 - 401，1990），大多数已与根据该染色体核苷酸序列数据推导的开放阅读框（ORF）相关联（奥利弗，S.G.等人，《自然》357，38 - 46，1992）。这是通过比较实验构建的物理图谱和由核苷酸序列数据生成的图谱，然后比较观察到的转录本与测序ORF的大小和位置来完成的。这些数据因此为酿酒酵母III号染色体测序ORF（基因）的可能产物及其在营养生长细胞中的可能表达水平提供了信息。
相似文献
1
Correlation between observed transcripts and sequenced ORFs of chromosome III of Saccharomyces cerevisiae.酿酒酵母第三条染色体上观察到的转录本与测序的开放阅读框之间的相关性。
Nucleic Acids Res. 1993 Mar 11;21(5):1149-53. doi: 10.1093/nar/21.5.1149.
2
Identification of likely genes on chromosome VI of Saccharomyces cerevisiae by correlating transcripts and nucleotide sequence data.通过关联转录本和核苷酸序列数据鉴定酿酒酵母第六条染色体上可能的基因。
DNA Res. 1997 Jun 30;4(3):205-13. doi: 10.1093/dnares/4.3.205.
3
Expression profiles of transcripts from 126 open reading frames in the entire chromosome VI of Saccharomyces cerevisiae by systematic northern analyses.通过系统的Northern分析对酿酒酵母整个第六条染色体上126个开放阅读框的转录本表达谱进行研究。
Yeast. 1997 Oct;13(13):1275-90. doi: 10.1002/(SICI)1097-0061(199710)13:13<1275::AID-YEA172>3.0.CO;2-7.
4
Transcript map of two regions from chromosome XI of Saccharomyces cerevisiae for interpretation of systematic sequencing results.酿酒酵母第十一条染色体上两个区域的转录图谱，用于系统测序结果的解读。
Yeast. 1994 Nov;10(11):1403-13. doi: 10.1002/yea.320101103.
5
The complete sequence of the unit YCR59, situated between CRY1 and MAT, reveals two long open reading frames, which cover 91% of the 10.1 kb segment.位于CRY1和MAT之间的YCR59单元的完整序列揭示了两个长开放阅读框，它们覆盖了10.1 kb片段的91%。
Yeast. 1991 May-Jun;7(4):413-24. doi: 10.1002/yea.320070411.
6
The complete sequence of a 6146 bp fragment of Saccharomyces cerevisiae chromosome III contains two new open reading frames.酿酒酵母三号染色体一个6146碱基对片段的完整序列包含两个新的开放阅读框。
Yeast. 1992 Jul;8(7):569-75. doi: 10.1002/yea.320080708.
7
Sequencing of a 9.9 kb segment on the right arm of yeast chromosome VII reveals four open reading frames, including PFK1, the gene coding for succinyl-CoA synthetase (beta-chain) and two ORFs sharing homology with ORFs of the yeast chromosome VIII.对酵母七号染色体右臂上一段9.9 kb的片段进行测序，发现了四个开放阅读框，包括编码琥珀酰辅酶A合成酶（β链）的基因PFK1，以及两个与酵母八号染色体上的开放阅读框具有同源性的开放阅读框。
Yeast. 1997 Mar 15;13(3):275-80. doi: 10.1002/(SICI)1097-0061(19970315)13:3<275::AID-YEA73>3.0.CO;2-G.
8
Construction of an ordered clone bank and systematic analysis of the whole transcripts of chromosome VI of Saccharomyces cerevisiae.
Nucleic Acids Res. 1991 Mar 25;19(6):1189-95. doi: 10.1093/nar/19.6.1189.
9
Sequencing and analysis of 51 kb on the right arm of chromosome XV from Saccharomyces cerevisiae reveals 30 open reading frames.对酿酒酵母十五号染色体右臂上51千碱基对进行测序和分析，发现了30个开放阅读框。
Yeast. 1996 Mar 15;12(3):281-8. doi: 10.1002/(SICI)1097-0061(19960315)12:3%3C281::AID-YEA904%3E3.0.CO;2-O.
10
Fifteen open reading frames in a 30.8 kb region of the right arm of chromosome VI from Saccharomyces cerevisiae.来自酿酒酵母六号染色体右臂30.8 kb区域的15个开放阅读框。
Yeast. 1996 Feb;12(2):177-90. doi: 10.1002/(SICI)1097-0061(199602)12:2%3C177::AID-YEA896%3E3.0.CO;2-A.
引用本文的文献
1
Activation of silent replication origins at autonomously replicating sequence elements near the HML locus in budding yeast.在芽殖酵母中，HML基因座附近自主复制序列元件处沉默复制起点的激活。
Mol Cell Biol. 1999 Sep;19(9):6098-109. doi: 10.1128/MCB.19.9.6098.
2
Yeast chromosome III: new gene functions.酵母三号染色体：新的基因功能。
EMBO J. 1994 Feb 1;13(3):493-503. doi: 10.1002/j.1460-2075.1994.tb06287.x.
3
Approaching the function of new genes by detection of their potential upstream activation sequences in Saccharomyces cerevisiae: application to chromosome III.通过检测酿酒酵母中潜在的上游激活序列来探究新基因的功能：应用于第三条染色体
Curr Genet. 1994 May;25(5):396-406. doi: 10.1007/BF00351777.
本文引用的文献
1
Two differentially regulated mRNAs with different 5' ends encode secreted with intracellular forms of yeast invertase.两个具有不同5'端且差异调控的mRNA编码酵母转化酶的细胞内形式和分泌形式。
Cell. 1982 Jan;28(1):145-54. doi: 10.1016/0092-8674(82)90384-1.
2
Isolation of a yeast centromere and construction of functional small circular chromosomes.酵母着丝粒的分离及功能性小环状染色体的构建。
Nature. 1980 Oct 9;287(5782):504-9. doi: 10.1038/287504a0.
3
Isolation of the centromere-linked CDC10 gene by complementation in yeast.通过酵母互补作用分离着丝粒连接的CDC10基因。
Proc Natl Acad Sci U S A. 1980 Apr;77(4):2173-7. doi: 10.1073/pnas.77.4.2173.
4
An electrophoretic karyotype for yeast.酵母的电泳核型。
Proc Natl Acad Sci U S A. 1985 Jun;82(11):3756-60. doi: 10.1073/pnas.82.11.3756.
5
The HTS1 gene encodes both the cytoplasmic and mitochondrial histidine tRNA synthetases of S. cerevisiae.HTS1基因编码酿酒酵母的细胞质和线粒体组氨酸tRNA合成酶。
Cell. 1986 Jul 18;46(2):235-43. doi: 10.1016/0092-8674(86)90740-3.
6
Polymorphisms on the right arm of yeast chromosome III associated with Ty transposition and recombination events.酵母三号染色体右臂上与Ty转座和重组事件相关的多态性。
Nucleic Acids Res. 1987 Nov 11;15(21):8963-82. doi: 10.1093/nar/15.21.8963.
7
Construction of a Not I restriction map of the fission yeast Schizosaccharomyces pombe genome.粟酒裂殖酵母基因组的Not I限制酶切图谱构建
Nucleic Acids Res. 1989 Apr 11;17(7):2801-18. doi: 10.1093/nar/17.7.2801.
8
Time of replication of ARS elements along yeast chromosome III.ARS元件沿酵母三号染色体的复制时间。
Mol Cell Biol. 1989 Oct;9(10):4488-94. doi: 10.1128/mcb.9.10.4488-4494.1989.
9
Genetic map of Saccharomyces cerevisiae, edition 10.酿酒酵母遗传图谱，第10版。
Yeast. 1989 Sep-Oct;5(5):321-403. doi: 10.1002/yea.320050503.
10
Chromosome III of Saccharomyces cerevisiae: an ordered clone bank, a detailed restriction map and analysis of transcripts suggest the presence of 160 genes.酿酒酵母的第三条染色体：一个有序克隆文库、一份详细的限制性酶切图谱以及转录本分析表明存在160个基因。
Yeast. 1990 Sep-Oct;6(5):383-401. doi: 10.1002/yea.320060504.
Zotero 插件