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酵母第十五号染色体左臂上一个29.425千碱基对的片段所含未知开放阅读框的数量是已知开放阅读框数量的两倍多。

A 29.425 kb segment on the left arm of yeast chromosome XV contains more than twice as many unknown as known open reading frames.

作者信息

Zumstein E, Pearson B M, Kalogeropoulos A, Schweizer M

机构信息

Institute of Food Research, Genetics & Microbiology Department, Norwich Research Park, Colney, U.K.

出版信息

Yeast. 1995 Aug;11(10):975-86. doi: 10.1002/yea.320111009.

Abstract

The nucleotide sequence of a 29.425 kb fragment localized on the left arm of chromosome XV from Saccharomyces cerevisiae has been determined. The sequence contains 13 open reading frames (ORFs) of which four encode the known genes ADH1, COQ3, MSH2 and RCF4. Predictions are made concerning the functions of the unknown ORFs. Some of the ORFs contain sequences similar to expressed sequence tags (EST) found in the database made available by TIGR. In particular, the highly expressed ADH1 gene is represented in this database by no less than 20 EST sequences. Two ARS sequences and a putative functional GCN4 motif have also been detected. One ORF (O0953) containing nine putative transmembrane segments is similar to a hypothetical membrane protein of Arabidopsis thaliana. Characteristic features of the other ORFs include ATP/GTP binding sites, a fungal Zn(2)-Cys(6) binuclear centre, an endoplasmic reticulum targeting sequence, a beta-transducin repeat signature and in two instances, good similarity to the prokaryotic lipoprotein signal peptide motif.

摘要

已确定酿酒酵母第十五号染色体左臂上一个29.425 kb片段的核苷酸序列。该序列包含13个开放阅读框(ORF),其中四个编码已知基因ADH1、COQ3、MSH2和RCF4。对未知ORF的功能进行了预测。一些ORF包含与TIGR提供的数据库中发现的表达序列标签(EST)相似的序列。特别是,高表达的ADH1基因在该数据库中至少由20个EST序列代表。还检测到两个ARS序列和一个假定的功能性GCN4基序。一个含有九个假定跨膜区段的ORF(O0953)与拟南芥的一种假定膜蛋白相似。其他ORF的特征包括ATP/GTP结合位点、真菌Zn(2)-Cys(6)双核中心、内质网靶向序列、β-转导蛋白重复序列特征,并且在两个实例中,与原核脂蛋白信号肽基序有很好的相似性。

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