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蛋白质中涉及半胱氨酸巯基的不同类型相互作用。

Different types of interactions involving cysteine sulfhydryl group in proteins.

作者信息

Pal D, Chakrabarti P

机构信息

Department of Biochemistry, Bose Institute, CIT Scheme VIIM, Calcutta, India.

出版信息

J Biomol Struct Dyn. 1998 Jun;15(6):1059-72. doi: 10.1080/07391102.1998.10509001.

Abstract

Various types of interactions involving the sulfhydryl group of free cysteine residues have been analyzed using known protein structures. In a hydrogen bond the -SH group is more amenable to donating its proton to a carbonyl group, rather than acting as a proton acceptor. It rarely interacts with a carboxylate group, and is a poor ligand to bind an anionic substrate. It is quite prone to make contacts that are definitely non-hydrogen bond type. In the S...C=O interaction the S atom is placed on the face of an amide group (mostly from the main-chain, but there are cases from the side-chain also) close to the C atom. Cases of S...N interaction, where the S atom is on top of the N atom of another residue (both main-, as well as side-chains, including the guanidinium group) are also observed. A considerable number of Cys residues have aromatic residues as neighbors, and here too, the preferred mode of interaction is along the face. The intra-residue S...C=O interaction constrains the main-chain and side-chain torsion angles (psi and chi1), whereas the inter-residue interactions are non-local and stabilize the tertiary structure. The S...C=O interaction may have a role in lowering the pKa values of the Cys residues in enzyme active sites.

摘要

利用已知的蛋白质结构,分析了涉及游离半胱氨酸残基巯基的各种相互作用类型。在氢键中,-SH基团更倾向于将其质子给予羰基,而不是作为质子受体。它很少与羧酸盐基团相互作用,并且是结合阴离子底物的不良配体。它很容易形成绝对非氢键类型的接触。在S...C=O相互作用中,S原子位于酰胺基团(主要来自主链,但也有来自侧链的情况)靠近C原子的面上。还观察到S...N相互作用的情况,其中S原子位于另一个残基(主链和侧链,包括胍基)的N原子上方。相当数量的半胱氨酸残基有芳香族残基作为邻居,在这里,首选的相互作用模式也是沿着表面。残基内的S...C=O相互作用限制了主链和侧链的扭转角(ψ和χ1),而残基间的相互作用是非局部的,并稳定了三级结构。S...C=O相互作用可能在降低酶活性位点中半胱氨酸残基的pKa值方面发挥作用。

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