Yim Lau Chui, Hongmei Jing, Aitchison Jonathan C, Pointing Stephen B
Department of Ecology and Biodiversity, The University of Hong Kong, Hong Kong, China.
FEMS Microbiol Ecol. 2006 Jul;57(1):80-91. doi: 10.1111/j.1574-6941.2006.00104.x.
We report an assessment of whole-community diversity for an extremely isolated geothermal location with considerable phylogenetic and phylogeographic novelty. We further demonstrate, using multiple statistical analyses of sequence data, that the response of community diversity is not monotonic to thermal stress along a gradient of 52-83 degrees C. A combination of domain- and division-specific PCR was used to obtain a broad spectrum of community phylotypes, which were resolved by denaturing gradient gel electrophoresis. Among 58 sequences obtained from microbial mats and streamers, some 95% suggest novel archaeal and bacterial diversity at the species level or higher. Moreover, new phylogeographic and thermally defined lineages among the Cyanobacteria, Chloroflexi, Eubacterium and Thermus are identified. Shannon-Wiener diversity estimates suggest that mats at 63 degrees C supported highest diversity, but when alternate models were applied [Average Taxonomic Distinctness (AvTD) and Variation in Taxonomic Distinctness (VarTD)] that also take into account the phylogenetic relationships between phylotypes, it is evident that greatest taxonomic diversity (AvTD) occurred in streamers at 65-70 degrees C, whereas greatest phylogenetic distance between taxa (VarTD) occurred in streamers of 83 degrees C. All models demonstrated that diversity is not related to thermal stress in a linear fashion.
我们报告了对一个极度孤立的地热地点的全群落多样性评估,该地点具有相当多的系统发育和系统地理学新奇性。我们进一步通过对序列数据进行多种统计分析证明,在52 - 83摄氏度的梯度范围内,群落多样性对热应激的响应并非单调。使用结构域和门类特异性PCR的组合来获得广泛的群落系统型,这些系统型通过变性梯度凝胶电泳进行解析。在从微生物垫和丝状菌中获得的58个序列中,约95%表明在物种水平或更高水平存在新的古菌和细菌多样性。此外,还鉴定了蓝细菌、绿弯菌、真细菌和嗜热栖热菌中新的系统地理学和热定义谱系。香农 - 维纳多样性估计表明,63摄氏度的微生物垫支持最高的多样性,但当应用考虑系统型之间系统发育关系的替代模型[平均分类学差异(AvTD)和分类学差异变异(VarTD)]时,很明显最大的分类学多样性(AvTD)出现在65 - 70摄氏度的丝状菌中,而分类单元之间最大的系统发育距离(VarTD)出现在83摄氏度的丝状菌中。所有模型都表明,多样性与热应激并非呈线性关系。