• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

相似文献

1
QM/MM computational studies of substrate water binding to the oxygen-evolving centre of photosystem II.光系统II放氧中心底物水结合的量子力学/分子力学计算研究。
Philos Trans R Soc Lond B Biol Sci. 2008 Mar 27;363(1494):1149-56; discussion 1156. doi: 10.1098/rstb.2007.2210.
2
The O-Evolving Complex of Photosystem II: Recent Insights from Quantum Mechanics/Molecular Mechanics (QM/MM), Extended X-ray Absorption Fine Structure (EXAFS), and Femtosecond X-ray Crystallography Data.光系统 II 的 O 演变复合体:来自量子力学/分子力学 (QM/MM)、扩展 X 射线吸收精细结构 (EXAFS) 和飞秒 X 射线晶体学数据的最新见解。
Acc Chem Res. 2017 Jan 17;50(1):41-48. doi: 10.1021/acs.accounts.6b00405. Epub 2016 Dec 21.
3
Quantum mechanics/molecular mechanics study of the catalytic cycle of water splitting in photosystem II.光系统II中水分裂催化循环的量子力学/分子力学研究
J Am Chem Soc. 2008 Mar 19;130(11):3428-42. doi: 10.1021/ja076130q. Epub 2008 Feb 22.
4
Mono-manganese mechanism of the photosystem II water splitting reaction by a unique Mn4Ca cluster.通过独特的Mn4Ca簇实现光系统II水分解反应的单锰机制
Biochim Biophys Acta. 2007 Jun;1767(6):484-92. doi: 10.1016/j.bbabio.2007.03.012. Epub 2007 Apr 4.
5
S1-state Mn4Ca complex of Photosystem II exists in equilibrium between the two most-stable isomeric substates: XRD and EXAFS evidence.光系统 II 中 S1 态 Mn4Ca 配合物存在于两种最稳定的异构亚稳态之间的平衡:XRD 和 EXAFS 证据。
J Photochem Photobiol B. 2011 Jul-Aug;104(1-2):100-10. doi: 10.1016/j.jphotobiol.2011.03.002. Epub 2011 Mar 13.
6
Structures and energetics for O2 formation in photosystem II.在光系统 II 中形成 O2 的结构和能量学。
Acc Chem Res. 2009 Dec 21;42(12):1871-80. doi: 10.1021/ar900117k.
7
The structure and activation of substrate water molecules in Sr(2+)-substituted photosystem II.锶(2+)取代的光系统II中底物水分子的结构与活化
Phys Chem Chem Phys. 2014 Oct 14;16(38):20834-43. doi: 10.1039/c4cp03082f. Epub 2014 Aug 28.
8
Substrate water exchange in the S state of photosystem II is dependent on the conformation of the MnCa cluster.在 PSII 的 S 态下,底物水的交换取决于 MnCa 簇的构象。
Phys Chem Chem Phys. 2020 Jun 21;22(23):12894-12908. doi: 10.1039/d0cp01380c. Epub 2020 May 6.
9
QM/MM Models of the O2-Evolving Complex of Photosystem II.QM/MM 模型的光系统 II 的 O2 进化复合物。
J Chem Theory Comput. 2006 Jul;2(4):1119-34. doi: 10.1021/ct060018l.
10
Structural changes of the oxygen-evolving complex in photosystem II during the catalytic cycle.在光合作用 II 反应中心的催化循环过程中,氧气释放复合体的结构变化。
J Biol Chem. 2013 Aug 2;288(31):22607-20. doi: 10.1074/jbc.M113.476622. Epub 2013 Jun 13.

引用本文的文献

1
Glycerol binding at the narrow channel of photosystem II stabilizes the low-spin S state of the oxygen-evolving complex.甘油在光系统 II 狭窄通道的结合稳定了放氧复合物的低自旋 S 态。
Photosynth Res. 2022 May;152(2):167-175. doi: 10.1007/s11120-022-00911-0. Epub 2022 Mar 23.
2
High-resolution cryo-electron microscopy structure of photosystem II from the mesophilic cyanobacterium, sp. PCC 6803.嗜热蓝藻 sp. PCC 6803 光系统 II 的高分辨率冷冻电镜结构。
Proc Natl Acad Sci U S A. 2022 Jan 4;119(1). doi: 10.1073/pnas.2116765118.
3
Energetics of proton release on the first oxidation step in the water-oxidizing enzyme.水氧化酶第一步氧化过程中质子释放的能量学
Nat Commun. 2015 Oct 7;6:8488. doi: 10.1038/ncomms9488.
4
Substrate-water exchange in photosystem II is arrested before dioxygen formation.在光系统II中,底物与水的交换在氧气形成之前就被阻断了。
Nat Commun. 2014 Jul 4;5:4305. doi: 10.1038/ncomms5305.
5
The S2 state of the oxygen-evolving complex of photosystem II explored by QM/MM dynamics: spin surfaces and metastable states suggest a reaction path towards the S3 state.通过量子力学/分子力学动力学探索的光系统II析氧复合物的S2态:自旋表面和亚稳态表明了通向S3态的反应路径。
Angew Chem Int Ed Engl. 2013 Nov 4;52(45):11744-11749. doi: 10.1002/anie.201306667. Epub 2013 Sep 25.
6
A reaction center-dependent photoprotection mechanism in a highly robust photosystem II from an extremophilic red alga, Cyanidioschyzon merolae.一种依赖于反应中心的光保护机制存在于一种极端耐热的红藻——Cyanidioschyzon merolae 的高度稳定的光系统 II 中。
J Biol Chem. 2013 Aug 9;288(32):23529-42. doi: 10.1074/jbc.M113.484659. Epub 2013 Jun 17.
7
Similarities of artificial photosystems by ruthenium oxo complexes and native water splitting systems.钌氧络合物人工光合作用体系与天然水分解体系的相似性。
Proc Natl Acad Sci U S A. 2012 Sep 25;109(39):15600-5. doi: 10.1073/pnas.1120705109. Epub 2012 Jul 3.
8
Oxomanganese complexes for natural and artificial photosynthesis.用于自然和人工光合作用的氧化锰配合物。
Curr Opin Chem Biol. 2012 Apr;16(1-2):11-8. doi: 10.1016/j.cbpa.2012.03.003. Epub 2012 Apr 3.
9
Structural-functional role of chloride in photosystem II.氯离子在光系统 II 中的结构功能作用。
Biochemistry. 2011 Jul 26;50(29):6312-5. doi: 10.1021/bi200685w. Epub 2011 Jun 27.
10
Is Mn-Bound Substrate Water Protonated in the S(2) State of Photosystem II?在光系统II的S(2)状态下,与锰结合的底物水会发生质子化吗?
Appl Magn Reson. 2010 Jan;37(1-4):123-136. doi: 10.1007/s00723-009-0051-1. Epub 2009 Nov 13.

本文引用的文献

1
QM/MM Models of the O2-Evolving Complex of Photosystem II.QM/MM 模型的光系统 II 的 O2 进化复合物。
J Chem Theory Comput. 2006 Jul;2(4):1119-34. doi: 10.1021/ct060018l.
2
A Self-Consistent Space-Domain Decomposition Method for QM/MM Computations of Protein Electrostatic Potentials.一种用于蛋白质静电势QM/MM计算的自洽空间域分解方法。
J Chem Theory Comput. 2006 Jan;2(1):175-86. doi: 10.1021/ct050218h.
3
X-ray Detection of the Period-Four Cycling of the Manganese Cluster in Photosynthetic Water Oxidizing Enzyme.光合水氧化酶中锰簇四周期循环的X射线检测
Science. 1992 Nov 20;258(5086):1335-7. doi: 10.1126/science.258.5086.1335.
4
Quantum mechanics/molecular mechanics structural models of the oxygen-evolving complex of photosystem II.光系统II析氧复合物的量子力学/分子力学结构模型
Curr Opin Struct Biol. 2007 Apr;17(2):173-80. doi: 10.1016/j.sbi.2007.03.015. Epub 2007 Mar 28.
5
Distinct mechanisms of bridging-oxo exchange in di-mu-O dimanganese complexes with and without water-binding sites: implications for water binding in the O(2)-evolving complex of photosystem II.具有和不具有水结合位点的双μ-氧二锰配合物中桥连氧交换的不同机制:对光系统II放氧复合物中水结合的影响
Inorg Chem. 2007 Mar 19;46(6):2193-203. doi: 10.1021/ic061968k. Epub 2007 Feb 13.
6
Distinct water-exchange mechanisms for trinuclear transition-metal clusters.三核过渡金属簇独特的水交换机制。
Inorg Chem. 2006 Sep 18;45(19):7962-7. doi: 10.1021/ic0609608.
7
Performance of molecular orbital methods and density functional theory in the computation of geometries and energies of metal aqua ions.分子轨道方法和密度泛函理论在金属水合离子几何结构和能量计算中的性能。
J Phys Chem B. 2005 Feb 3;109(4):1510-27. doi: 10.1021/jp045407v.
8
Determination of mu-oxo exchange rates in di-mu-oxo dimanganese complexes by electrospray ionization mass spectrometry.通过电喷雾电离质谱法测定二-μ-氧代二锰配合物中的μ-氧交换速率
J Am Chem Soc. 2006 Jul 26;128(29):9457-65. doi: 10.1021/ja061348i.
9
Characterization of synthetic oxomanganese complexes and the inorganic core of the O2-evolving complex in photosystem II: evaluation of the DFT/B3LYP level of theory.光系统II中合成氧锰配合物及析氧复合物无机核心的表征:密度泛函理论(DFT)/B3LYP理论水平的评估
J Inorg Biochem. 2006 Apr;100(4):786-800. doi: 10.1016/j.jinorgbio.2006.01.017. Epub 2006 Feb 28.
10
The mechanism of photosynthetic water splitting.光合水分解的机制。
Photochem Photobiol Sci. 2005 Dec;4(12):940-9. doi: 10.1039/b506755c. Epub 2005 Oct 4.

光系统II放氧中心底物水结合的量子力学/分子力学计算研究。

QM/MM computational studies of substrate water binding to the oxygen-evolving centre of photosystem II.

作者信息

Sproviero Eduardo M, Shinopoulos Katherine, Gascón José A, McEvoy James P, Brudvig Gary W, Batista Victor S

机构信息

Department of Chemistry, Yale University, PO Box 208107, New Haven, CT 06520-8107, USA.

出版信息

Philos Trans R Soc Lond B Biol Sci. 2008 Mar 27;363(1494):1149-56; discussion 1156. doi: 10.1098/rstb.2007.2210.

DOI:10.1098/rstb.2007.2210
PMID:17971333
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2614095/
Abstract

This paper reports computational studies of substrate water binding to the oxygen-evolving centre (OEC) of photosystem II (PSII), completely ligated by amino acid residues, water, hydroxide and chloride. The calculations are based on quantum mechanics/molecular mechanics hybrid models of the OEC of PSII, recently developed in conjunction with the X-ray crystal structure of PSII from the cyanobacterium Thermosynechococcus elongatus. The model OEC involves a cuboidal Mn3CaO4Mn metal cluster with three closely associated manganese ions linked to a single mu4-oxo-ligated Mn ion, often called the 'dangling manganese'. Two water molecules bound to calcium and the dangling manganese are postulated to be substrate molecules, responsible for dioxygen formation. It is found that the energy barriers for the Mn(4)-bound water agree nicely with those of model complexes. However, the barriers for Ca-bound waters are substantially larger. Water binding is not simply correlated to the formal oxidation states of the metal centres but rather to their corresponding electrostatic potential atomic charges as modulated by charge-transfer interactions. The calculations of structural rearrangements during water exchange provide support for the experimental finding that the exchange rates with bulk 18 O-labelled water should be smaller for water molecules coordinated to calcium than for water molecules attached to the dangling manganese. The models also predict that the S1-->S2 transition should produce opposite effects on the two water-exchange rates.

摘要

本文报道了对与光系统II(PSII)的析氧中心(OEC)结合的底物水的计算研究,该OEC完全由氨基酸残基、水、氢氧化物和氯离子连接。计算基于PSII的OEC的量子力学/分子力学混合模型,该模型是最近结合来自嗜热栖热放线菌的PSII的X射线晶体结构开发的。模型OEC包含一个长方体状的Mn3CaO4Mn金属簇,其中三个紧密相连的锰离子与一个单μ4-氧连接的锰离子相连,该锰离子通常被称为“悬空锰”。假定与钙和悬空锰结合的两个水分子是底物分子,负责形成二氧。发现与Mn(4)结合的水的能垒与模型配合物的能垒非常吻合。然而,与钙结合的水的能垒要大得多。水的结合不仅仅与金属中心的形式氧化态相关,而是与它们相应的静电势原子电荷相关,该电荷由电荷转移相互作用调节。水交换过程中结构重排的计算为实验发现提供了支持,即与钙配位的水分子与大量18O标记水的交换速率应比与悬空锰相连的水分子的交换速率小。模型还预测S1→S2跃迁应该对两种水交换速率产生相反的影响。