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多时间尺度上的细胞水动力学

Cell water dynamics on multiple time scales.

作者信息

Persson Erik, Halle Bertil

机构信息

Center for Molecular Protein Science, Department of Biophysical Chemistry, Lund University, SE-22100 Lund, Sweden.

出版信息

Proc Natl Acad Sci U S A. 2008 Apr 29;105(17):6266-71. doi: 10.1073/pnas.0709585105. Epub 2008 Apr 24.

Abstract

Water-biomolecule interactions have been extensively studied in dilute solutions, crystals, and rehydrated powders, but none of these model systems may capture the behavior of water in the highly organized intracellular milieu. Because of the experimental difficulty of selectively probing the structure and dynamics of water in intact cells, radically different views about the properties of cell water have proliferated. To resolve this long-standing controversy, we have measured the (2)H spin relaxation rate in living bacteria cultured in D(2)O. The relaxation data, acquired in a wide magnetic field range (0.2 mT-12 T) and analyzed in a model-independent way, reveal water dynamics on a wide range of time scales. Contradicting the view that a substantial fraction of cell water is strongly perturbed, we find that approximately 85% of cell water in Escherichia coli and in the extreme halophile Haloarcula marismortui has bulk-like dynamics. The remaining approximately 15% of cell water interacts directly with biomolecular surfaces and is motionally retarded by a factor 15 +/- 3 on average, corresponding to a rotational correlation time of 27 ps. This dynamic perturbation is three times larger than for small monomeric proteins in solution, a difference we attribute to secluded surface hydration sites in supramolecular assemblies. The relaxation data also show that a small fraction ( approximately 0.1%) of cell water exchanges from buried hydration sites on the microsecond time scale, consistent with the current understanding of protein hydration in solutions and crystals.

摘要

水与生物分子的相互作用已在稀溶液、晶体和再水化粉末中得到广泛研究,但这些模型系统都无法捕捉高度有序的细胞内环境中水的行为。由于选择性探测完整细胞中水的结构和动力学存在实验困难,关于细胞水性质的截然不同的观点大量涌现。为了解决这一长期存在的争议,我们测量了在D₂O中培养的活细菌中的²H自旋弛豫率。在宽磁场范围(0.2 mT - 12 T)内获取并以与模型无关的方式分析的弛豫数据,揭示了广泛时间尺度上的水动力学。与相当一部分细胞水受到强烈扰动的观点相反,我们发现大肠杆菌和极端嗜盐菌嗜盐碱红菌中约85%的细胞水具有类似本体的动力学。其余约15%的细胞水直接与生物分子表面相互作用,平均运动速度减慢15±3倍,对应于27 ps的旋转相关时间。这种动态扰动比溶液中小单体蛋白的大两倍,我们将这种差异归因于超分子组装体中隐蔽的表面水合位点。弛豫数据还表明,一小部分(约0.1%)细胞水在微秒时间尺度上从埋藏的水合位点交换,这与目前对溶液和晶体中蛋白质水合的理解一致。

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