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生物信息学、多尺度建模与国际生理科学联合会生理组计划。

Bioinformatics, multiscale modeling and the IUPS Physiome Project.

作者信息

Hunter Peter J, Crampin Edmund J, Nielsen Poul M F

机构信息

Auckland Bioengineering Institute, The University of Auckland, 70 Symonds St, Auckland, New Zealand.

出版信息

Brief Bioinform. 2008 Jul;9(4):333-43. doi: 10.1093/bib/bbn024. Epub 2008 May 13.

Abstract

Multiscale modeling is required for linking physiological processes operating at the organ and tissue levels to signal transduction networks and other subcellular processes. Several XML markup languages, including CellML, have been developed to encode models and to facilitate the building of model repositories and general purpose software tools. Progress in this area is described and illustrated with reference to the heart Physiome Project which aims to understand cardiac arrhythmias in terms of structure-function relations from proteins up to cells, tissues and organs.

摘要

需要进行多尺度建模,以便将在器官和组织水平上运行的生理过程与信号转导网络及其他亚细胞过程联系起来。包括CellML在内的几种XML标记语言已被开发出来,用于对模型进行编码,并促进模型库和通用软件工具的构建。本文将参考心脏生理组计划来描述和说明这一领域的进展,该计划旨在从蛋白质到细胞、组织和器官的结构-功能关系方面理解心律失常。

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