Fierer Noah, Hamady Micah, Lauber Christian L, Knight Rob
Department of Ecology and Evolutionary Biology, University of Colorado, UCB 334, Boulder, CO 80309, USA.
Proc Natl Acad Sci U S A. 2008 Nov 18;105(46):17994-9. doi: 10.1073/pnas.0807920105. Epub 2008 Nov 12.
Bacteria thrive on and within the human body. One of the largest human-associated microbial habitats is the skin surface, which harbors large numbers of bacteria that can have important effects on health. We examined the palmar surfaces of the dominant and nondominant hands of 51 healthy young adult volunteers to characterize bacterial diversity on hands and to assess its variability within and between individuals. We used a novel pyrosequencing-based method that allowed us to survey hand surface bacterial communities at an unprecedented level of detail. The diversity of skin-associated bacterial communities was surprisingly high; a typical hand surface harbored >150 unique species-level bacterial phylotypes, and we identified a total of 4,742 unique phylotypes across all of the hands examined. Although there was a core set of bacterial taxa commonly found on the palm surface, we observed pronounced intra- and interpersonal variation in bacterial community composition: hands from the same individual shared only 17% of their phylotypes, with different individuals sharing only 13%. Women had significantly higher diversity than men, and community composition was significantly affected by handedness, time since last hand washing, and an individual's sex. The variation within and between individuals in microbial ecology illustrated by this study emphasizes the challenges inherent in defining what constitutes a "healthy" bacterial community; addressing these challenges will be critical for the International Human Microbiome Project.
细菌在人体内外大量繁殖。与人类相关的最大微生物栖息地之一是皮肤表面,这里栖息着大量细菌,它们可能对健康产生重要影响。我们检查了51名健康年轻成年志愿者优势手和非优势手的手掌表面,以表征手部细菌多样性,并评估其在个体内部和个体之间的变异性。我们使用了一种基于焦磷酸测序的新方法,使我们能够以前所未有的详细程度调查手部表面细菌群落。与皮肤相关的细菌群落多样性惊人地高;一个典型的手部表面含有超过150种独特的物种水平细菌系统发育型,我们在所有检查的手部中共鉴定出4742种独特的系统发育型。尽管在手掌表面通常存在一组核心细菌类群,但我们观察到细菌群落组成在个体内部和个体之间存在明显差异:同一个体的双手仅共享其17%的系统发育型,不同个体之间仅共享13%。女性的多样性明显高于男性,群落组成受利手、上次洗手后的时间以及个体性别显著影响。本研究表明的个体内部和个体之间微生物生态的变异性强调了定义什么构成“健康”细菌群落所固有的挑战;应对这些挑战对国际人类微生物组计划至关重要。