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铵阳离子对 K12G 磷酸丙糖异构酶的拯救:碎片状态下的酶反应。

Rescue of K12G triosephosphate isomerase by ammonium cations: the reaction of an enzyme in pieces.

机构信息

Department of Chemistry, University at Buffalo, SUNY, Buffalo, New York 14260-3000, USA.

出版信息

J Am Chem Soc. 2010 Sep 29;132(38):13525-32. doi: 10.1021/ja106104h.

Abstract

The K12G mutation at yeast triosephosphate isomerase (TIM) results in a 5.5 × 10(5)-fold decrease in k(cat)/K(m) for isomerization of glyceraldehyde 3-phosphate, and the activity of this mutant can be successfully "rescued" by NH(4)(+) and primary alkylammonium cations. The transition state for the K12G mutant TIM-catalyzed reaction is stabilized by 1.5 kcal/mol by interaction with NH(4)(+). The larger 3.9 kcal/mol stabilization by CH(3)CH(2)CH(2)CH(2)NH(3)(+) is due to hydrophobic interactions between the mutant enzyme and the butyl side chain of the cation activator. There is no significant transfer of a proton from alkylammonium cations to GAP at the transition state for the K12G mutant TIM-catalyzed reaction, because activation by a series of RNH(3)(+) shows little or no dependence on the pK(a) of RNH(3)(+). A comparison of k(cat)/K(m) = 6.6 × 10(6) M(-1) s(-1) for the wildtype TIM-catalyzed isomerization of GAP and the third-order rate constant of 150 M(-2) s(-1) for activation by NH(4)(+) of the K12G mutant TIM-catalyzed isomerization shows that stabilization of the bound transition state by the effectively intramolecular interaction of the cationic side chain of Lys-12 at wildtype TIM is 6.3 kcal/mol greater than that for the corresponding intermolecular interaction of NH(4)(+) at K12G mutant TIM.

摘要

酵母磷酸丙糖异构酶(TIM)的 K12G 突变导致甘油醛 3-磷酸异构化的 k(cat)/K(m) 值降低了 5.5×10(5)倍,该突变体的活性可以被 NH(4)(+)和伯烷基铵阳离子成功“挽救”。K12G 突变 TIM 催化反应的过渡态通过与 NH(4)(+)相互作用稳定了 1.5 kcal/mol。较大的 3.9 kcal/mol 稳定性由 CH(3)CH(2)CH(2)CH(2)NH(3)(+)提供,这是由于突变酶和阳离子激活剂的丁基侧链之间存在疏水相互作用。在 K12G 突变 TIM 催化反应的过渡态中,没有从烷基铵阳离子向 GAP 转移质子,因为一系列 RNH(3)(+)的激活几乎没有或没有依赖于 RNH(3)(+)的 pK(a)。野生型 TIM 催化 GAP 异构化的 k(cat)/K(m) = 6.6×10(6) M(-1) s(-1)与 K12G 突变 TIM 催化异构化的 NH(4)(+)激活的三级速率常数 150 M(-2) s(-1)进行比较,表明由阳离子侧链的有效内分子相互作用稳定的结合过渡态在野生型 TIM 中比 K12G 突变 TIM 中的 NH(4)(+)的相应的分子间相互作用稳定了 6.3 kcal/mol。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc34/2945285/def10d160597/nihms234786f1.jpg

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