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布尔网络模型的约简。

Reduction of Boolean network models.

机构信息

Department of Mathematics, University of Nebraska-Lincoln, USA.

出版信息

J Theor Biol. 2011 Nov 21;289:167-72. doi: 10.1016/j.jtbi.2011.08.042. Epub 2011 Sep 5.

Abstract

Boolean networks have been successfully used in modelling gene regulatory networks. However, for large networks, analysis by simulation becomes unfeasible. In this paper we propose a reduction method for Boolean networks that decreases the size of the network, while preserving important dynamical properties and topological features. As a result, the reduced network can be used to infer properties about the original network and to gain a better understanding of the role of network topology on the dynamics. In particular, we use the reduction method to study steady states of Boolean networks and apply our results to models of Th-lymphocyte differentiation and the lac operon.

摘要

布尔网络已成功应用于基因调控网络建模。然而,对于大型网络,通过模拟进行分析变得不可行。本文提出了一种布尔网络约简方法,该方法可减小网络的规模,同时保留重要的动态特性和拓扑特征。因此,约简后的网络可用于推断原始网络的属性,并更好地理解网络拓扑对动力学的作用。特别是,我们使用该约简方法来研究布尔网络的稳态,并将结果应用于 T 淋巴细胞分化和乳糖操纵子的模型。

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