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利用光谱学和量子力学/分子力学计算相结合的方法,深入了解细胞色素 P450 NO 还原酶中可观察到的反应中间体的本质。

New insights into the nature of observable reaction intermediates in cytochrome P450 NO reductase by using a combination of spectroscopy and quantum mechanics/molecular mechanics calculations.

机构信息

Max-Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470 Mülheim an der Ruhr (Germany), Fax: (+49) 208-306-3951.

出版信息

Chemistry. 2014 Feb 3;20(6):1602-14. doi: 10.1002/chem.201302443. Epub 2014 Jan 22.

DOI:10.1002/chem.201302443
PMID:24453075
Abstract

Cytochrome P450 NO reductase is an unusual member of the cytochrome P450 superfamily. It catalyzes the reduction of nitric oxide to nitrous oxide. The reaction intermediates were studied in detail by a combination of experimental and computational methods. They have been characterized experimentally by UV/Vis, EPR, Mössbauer, and MCD spectroscopy. In conjunction with quantum mechanics/molecular mechanics (QM/MM) calculations, we sought to characterize the resting state and the two detectable intermediates in detail and to elucidate the nature of the key intermediate I of the reaction. Six possible candidates were taken into account for the unknown key intermediate in the computational study, differing in protonation state and electronic structure. Two out of the six candidates could be identified as putative intermediates I with the help of the spectroscopic data: singlet diradicals Fe(III)-NHO(·)(-) and Fe(III)-NHOH(.). In a companion publication (C. Riplinger, F. Neese, ChemPhysChem- 2011, 12, 3192) we have used QM/MM models based on these structures and performed a kinetic simulation. The combination of these two studies shows the nature of the key intermediate to be the singlet diradical, Fe(III)-NHOH(·).

摘要

细胞色素 P450 一氧化氮还原酶是细胞色素 P450 超家族的一个不寻常成员。它催化一氧化氮还原为笑气。通过实验和计算方法的结合,详细研究了反应中间体。它们已经通过紫外/可见、EPR、穆斯堡尔和 MCD 光谱学进行了实验表征。结合量子力学/分子力学(QM/MM)计算,我们试图详细描述静止状态和两个可检测的中间体,并阐明反应的关键中间体 I 的性质。在计算研究中,对于未知的关键中间体考虑了六个可能的候选物,它们在质子化状态和电子结构上有所不同。在光谱数据的帮助下,其中两个候选物可以被识别为假定的中间体 I:单重态自由基 Fe(III)-NHO(·)(-)和 Fe(III)-NHOH(.)。在一篇相关的出版物(C. Riplinger,F. Neese,ChemPhysChem-2011, 12, 3192)中,我们使用了基于这些结构的 QM/MM 模型,并进行了动力学模拟。这两项研究的结合表明,关键中间体的性质是单重态自由基 Fe(III)-NHOH(·)。

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