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mtsslSuite:在PyMOL中进行自旋标记、三边测量和距离受限刚体对接

mtsslSuite: spin labelling, trilateration and distance-constrained rigid body docking in PyMOL.

作者信息

Hagelueken Gregor, Abdullin Dinar, Ward Richard, Schiemann Olav

机构信息

Institute of Physical and Theoretical Chemistry, University of Bonn, Bonn, Germany.

Biomedical Sciences Research Complex, The University of St. Andrews, Fife, UK.

出版信息

Mol Phys. 2013 Oct;111(18-19):2757-2766. doi: 10.1080/00268976.2013.809804. Epub 2013 Jul 1.

Abstract

Nanometer distance measurements based on electron paramagnetic resonance methods in combination with site-directed spin labelling are powerful tools for the structural analysis of macromolecules. The software package mtsslSuite provides scientists with a set of tools for the translation of experimental distance distributions into structural information. The package is based on the previously published mtsslWizard software for spin labelling. The mtsslSuite includes a new version of MtsslWizard that has improved performance and now includes additional types of spin labels. Moreover, it contains applications for the trilateration of paramagnetic centres in biomolecules and for rigid-body docking of subdomains of macromolecular complexes. The mtsslSuite is tested on a number of challenging test cases and its strengths and weaknesses are evaluated.

摘要

基于电子顺磁共振方法结合定点自旋标记的纳米距离测量是用于大分子结构分析的强大工具。软件包mtsslSuite为科学家提供了一套将实验距离分布转化为结构信息的工具。该软件包基于之前发布的用于自旋标记的mtsslWizard软件。mtsslSuite包含一个性能有所提升且现在包含更多类型自旋标记的新版MtsslWizard。此外,它还包含用于生物分子中顺磁中心三边测量以及大分子复合物亚结构域刚体对接的应用程序。mtsslSuite在多个具有挑战性的测试案例上进行了测试,并对其优缺点进行了评估。

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