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基于远程化学位移效应的蛋白质表观介电常数及其温度依赖性。

Protein apparent dielectric constant and its temperature dependence from remote chemical shift effects.

作者信息

An Liaoyuan, Wang Yefei, Zhang Ning, Yan Shihai, Bax Ad, Yao Lishan

机构信息

Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences , Qingdao, 266101, China.

出版信息

J Am Chem Soc. 2014 Sep 17;136(37):12816-9. doi: 10.1021/ja505852b. Epub 2014 Sep 5.

Abstract

A NMR protocol is introduced that permits accurate measurement of minute, remote chemical shift perturbations (CSPs), caused by a mutation-induced change in the electric field. Using protein GB3 as a model system, (1)H(N) CSPs in K19A and K19E mutants can be fitted to small changes in the electric field at distal sites in the protein using the Buckingham equation, yielding an apparent dielectric constant εa of 8.6 ± 0.8 at 298 K. These CSPs, and their derived εa value, scale strongly with temperature. For example, CSPs at 313 K are about ∼30% smaller than those at 278 K, corresponding to an effective εa value of about 7.3 at 278 K and 10.5 at 313 K. Molecular dynamics simulations in explicit solvent indicate that solvent water makes a significant contribution to εa.

摘要

本文介绍了一种核磁共振(NMR)实验方案,该方案能够精确测量由电场中突变引起的微小远程化学位移扰动(CSP)。以蛋白质GB3作为模型系统,利用白金汉方程,K19A和K19E突变体中的(1)H(N)CSP可以与蛋白质远端位点电场的微小变化相拟合,在298K时得到表观介电常数εa为8.6±0.8。这些CSP及其推导的εa值与温度密切相关。例如,313K时的CSP比278K时的小约30%,对应于278K时约7.3和313K时约10.5的有效εa值。在明确溶剂中的分子动力学模拟表明,溶剂水对εa有显著贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1c6/4183759/ad26d5511f2a/ja-2014-05852b_0002.jpg

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