长双歧杆菌105-A的全基因组序列，一株具有高转化效率的菌株。
Complete Genome Sequence of Bifidobacterium longum 105-A, a Strain with High Transformation Efficiency.
作者信息
Kanesaki Yu, Masutani Hisayoshi, Sakanaka Mikiyasu, Shiwa Yuh, Fujisawa Takatomo, Nakamura Yasukazu, Yokota Atsushi, Fukiya Satoru, Suzuki Tohru, Yoshikawa Hirofumi
机构信息
Genome Research Center, Tokyo University of Agriculture, Setagaya, Tokyo, Japan.
Graduate School of Applied Biological Sciences, Gifu University, Gifu, Gifu, Japan.
出版信息
Genome Announc. 2014 Dec 18;2(6):e01311-14. doi: 10.1128/genomeA.01311-14.
Abstract
Bifidobacterium longum 105-A shows high transformation efficiency and allows for the generation of gene knockout mutants through homologous recombination. Here, we report the complete genome sequence of strain 105-A. Genes encoding at least four putative restriction-modification systems were found in this genome, which might contribute to its transformation efficiency.
摘要
长双歧杆菌105-A表现出高转化效率，并允许通过同源重组产生基因敲除突变体。在此，我们报告了菌株105-A的完整基因组序列。在该基因组中发现了编码至少四种假定的限制修饰系统的基因，这可能有助于其转化效率。
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2
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PLoS One. 2014 Apr 17;9(4):e94875. doi: 10.1371/journal.pone.0094875. eCollection 2014.
3
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J Biol Chem. 2013 Aug 30;288(35):25194-25206. doi: 10.1074/jbc.M113.484733. Epub 2013 Jul 10.
4
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5
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6
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8
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