Sengupta Aditi, Dick Warren A
School of Environment and Natural Resources, The Ohio Agricultural Research and Development Center/The Ohio State University, Wooster, OH, 44691, USA.
Microb Ecol. 2015 Oct;70(3):853-9. doi: 10.1007/s00248-015-0609-4. Epub 2015 May 2.
The ability of soil to provide ecosystem services is dependent on microbial diversity, with 80-90 % of the processes in soil being mediated by microbes. There still exists a knowledge gap in the types of microorganisms present in soil and how soil management affects them. However, identification of microorganisms is severely limited by classical culturing techniques that have been traditionally used in laboratories. Metagenomic approaches are increasingly becoming common, with current high-throughput sequencing approaches allowing for more in-depth analysis. We conducted a preliminary analysis of bacterial diversity in soils from the longest continuously maintained no-till (NT) plots in the world (52 years) and in adjacent plow-till (PT) plots in Ohio, USA managed similarly except for tillage. Bacterial diversity was determined using a culture-independent approach of high-throughput pyrosequencing of the 16S rRNA gene. Proteobacteria and Acidobacteria were predominant in both samples but the NT soil had a higher number of reads, bacterial richness, and five unique phyla. Four unique phyla were observed in PT and 99 % of the community had relative abundance of <1 %. Plowing and secondary tillage tend to homogenize the soil and reduces the unique (i.e., diverse) microenvironments where microbial populations can reside. We conclude that tillage leads to fewer dominant species being present in soil and that these species contribute to a higher percentage of the total community.
土壤提供生态系统服务的能力取决于微生物多样性,土壤中80%-90%的过程由微生物介导。关于土壤中存在的微生物类型以及土壤管理如何影响这些微生物,仍然存在知识空白。然而,微生物的鉴定受到传统实验室中使用的经典培养技术的严重限制。宏基因组学方法越来越普遍,当前的高通量测序方法能够进行更深入的分析。我们对美国俄亥俄州世界上连续免耕时间最长(52年)的地块以及相邻的翻耕地块的土壤细菌多样性进行了初步分析,除了耕作方式外,这两个地块的管理方式相似。使用16S rRNA基因高通量焦磷酸测序的非培养方法来确定细菌多样性。变形菌门和酸杆菌门在两个样本中都占主导地位,但免耕地块的读数、细菌丰富度和五个独特的门的数量更多。在翻耕地块中观察到四个独特的门,并且99%的群落相对丰度<1%。翻耕和二次耕作往往会使土壤均匀化,并减少微生物种群可以栖息的独特(即多样的)微环境。我们得出结论,耕作导致土壤中占主导地位的物种减少,并且这些物种在总群落中所占的百分比更高。