Valim Clarissa, Ahmad Rushdy, Lanaspa Miguel, Tan Yan, Acácio Sozinho, Gillette Michael A, Almendinger Katherine D, Milner Danny A, Madrid Lola, Pellé Karell, Harezlak Jaroslaw, Silterra Jacob, Alonso Pedro L, Carr Steven A, Mesirov Jill P, Wirth Dyann F, Wiegand Roger C, Bassat Quique
1 Department of Immunology and Infectious Diseases, Harvard T. H. Chan School of Public Health, Boston, Massachusetts.
2 Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts.
Am J Respir Crit Care Med. 2016 Feb 15;193(4):448-59. doi: 10.1164/rccm.201506-1100OC.
Plasma-detectable biomarkers that rapidly and accurately diagnose bacterial infections in children with suspected pneumonia could reduce the morbidity of respiratory disease and decrease the unnecessary use of antibiotic therapy.
Using 56 markers measured in a multiplexed immunoassay, we sought to identify proteins and protein combinations that could discriminate bacterial from viral or malarial diagnoses.
We selected 80 patients with clinically diagnosed pneumonia (as defined by the World Health Organization) who also met criteria for bacterial, viral, or malarial infection based on clinical, radiographic, and laboratory results. Ten healthy community control subjects were enrolled to assess marker reliability. Patients were subdivided into two sets: one for identifying potential markers and another for validating them.
Three proteins (haptoglobin, tumor necrosis factor receptor 2 or IL-10, and tissue inhibitor of metalloproteinases 1) were identified that, when combined through a classification tree signature, accurately classified patients into bacterial, malarial, and viral etiologies and misclassified only one patient with bacterial pneumonia from the validation set. The overall sensitivity and specificity of this signature for the bacterial diagnosis were 96 and 86%, respectively. Alternative combinations of markers with comparable accuracy were selected by support vector machine and regression models and included haptoglobin, IL-10, and creatine kinase-MB.
Combinations of plasma proteins accurately identified children with a respiratory syndrome who were likely to have bacterial infections and who would benefit from antibiotic therapy. When used in conjunction with malaria diagnostic tests, they may improve diagnostic specificity and simplify treatment decisions for clinicians.
血浆中可检测到的生物标志物能够快速、准确地诊断疑似肺炎儿童的细菌感染,这可以降低呼吸系统疾病的发病率,并减少抗生素治疗的不必要使用。
通过多重免疫测定法检测56种标志物,我们试图识别能够区分细菌、病毒或疟疾诊断的蛋白质及蛋白质组合。
我们选择了80例临床诊断为肺炎(按照世界卫生组织的定义)的患者,这些患者根据临床、影像学和实验室检查结果也符合细菌、病毒或疟疾感染的标准。纳入10名健康社区对照受试者以评估标志物的可靠性。患者被分为两组:一组用于识别潜在标志物,另一组用于验证这些标志物。
确定了三种蛋白质(触珠蛋白、肿瘤坏死因子受体2或白细胞介素-10以及金属蛋白酶组织抑制剂1),当通过分类树特征进行组合时,能够准确地将患者分为细菌、疟疾和病毒病因组,并且在验证组中仅将一名细菌性肺炎患者误分类。该特征对细菌诊断的总体敏感性和特异性分别为96%和86%。通过支持向量机和回归模型选择了具有可比准确性的替代标志物组合,包括触珠蛋白、白细胞介素-10和肌酸激酶-MB。
血浆蛋白组合能够准确识别患有呼吸道综合征且可能患有细菌感染并将从抗生素治疗中获益的儿童。当与疟疾诊断测试联合使用时,它们可能会提高诊断特异性,并简化临床医生的治疗决策。