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噬菌体H188的全基因组序列:一种从黄海分离出的新型坎氏弧菌噬菌体

Complete Genomic Sequence of Bacteriophage H188: A Novel Vibrio kanaloae Phage Isolated from Yellow Sea.

作者信息

Li Yan, Wang Min, Liu Qian, Song Xue, Wang Duobing, Ma Yu, Shao Hongbing, Jiang Yong

机构信息

College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.

出版信息

Curr Microbiol. 2016 May;72(5):628-33. doi: 10.1007/s00284-015-0984-6. Epub 2016 Feb 8.

Abstract

Phage H188, a novel Vibrio kanaloae phage, was isolated from the surface water of Yellow Sea. Morphological analysis by transmission electron microscopy reveals that it belongs to the family Myoviridae. Present result suggests that the phage is stable at pH between 4.0 and 12.0. No significant difference in phage titers is noted at temperature 30-50 °C. A latent period of approximately 96 mins is indicated by the one-step growth curve. And, the burst size is about three virions per cell. Furthermore, genomic analysis of H188 reveals a genome size of 50364 bp with 43.63 % G+C content, and 76 putative open reading frames. There is no obvious similarity between H188 and other known phages by genomic comparison. Moreover, the H188 genome includes modules for phage structure, phage packaging, DNA replication and regulation, and some additional functions.

摘要

噬菌体H188是一种新型的坎氏弧菌噬菌体,从黄海表层水分离得到。透射电子显微镜的形态学分析表明它属于肌尾噬菌体科。目前的结果表明该噬菌体在pH值4.0至12.0之间稳定。在30-50°C的温度下,噬菌体滴度没有显著差异。一步生长曲线表明潜伏期约为96分钟。并且,裂解量约为每个细胞三个病毒体。此外,对H188的基因组分析显示基因组大小为50364 bp,G+C含量为43.63%,有76个推定的开放阅读框。通过基因组比较,H188与其他已知噬菌体之间没有明显的相似性。此外,H188基因组包括噬菌体结构、噬菌体包装、DNA复制和调控以及一些其他功能的模块。

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