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一株新型噬菌体 phiTY18 在中国厦门沿海海水样本中的生物学特性及其基因组分析。

Biological characteristics and genomic analysis of a novel phage phiTY18 isolated from the coastal water of Xiamen China.

机构信息

Fisheries College, Jimei University, Engineering Research Center of the Modern Technology for Eel Industry, Ministry of Education, Xiamen, Fujian, China.

Guangxi Key Laboratory of Aquatic Genetic Breeding and Healthy Aquaculture, Guangxi Academy of Fishery Sciences, Nanning, China.

出版信息

Front Cell Infect Microbiol. 2022 Oct 21;12:1035364. doi: 10.3389/fcimb.2022.1035364. eCollection 2022.

Abstract

is a common pathogen usually controlled by antibiotics in mariculture. Notably, traditional antibiotic therapy is becoming less effective because of the emergence of bacterial resistance, hence new strategies need to be found to overcome this challenge. Bacteriophages, a class of viruses that lyse bacteria, can help us control drug-resistant bacteria. In this study, a novel phage phiTY18 isolated from the coastal water of Xiamen was explored. Transmission electron microscopy showed that phiTY18 had an icosahedral head of 130.0 ± 1.2 nm diameter and a contractile tail of length of 66.7 ± 0.6 nm. The phage titer could reach 7.2×10 PFU/mL at the optimal MOI (0.01). The phage phiTY18 had a degree of tolerance to heat and acid and base. At the temperature of 50°C (pH7.0, 1h) the survival phages reached 1.28×10 PFU/mL, and at pH 5-9 (30°C, 1h), the survival phages was greater than 6.37×10 PFU/mL Analysis of the phage one-step growth curve revealed that it had a latent period of 10min, a rise period of 10min, and an average burst size of the phage was 48 PFU/cell. Genome sequencing and analysis drew that phage phiTY18 had double-stranded DNA (191,500 bp) with 34.90% G+C content and contained 117 open reading frames (ORFs) and 24 tRNAs. Phylogenetic tree based on major capsid protein () revealed that phage phiTY18 (MW451250) was highly related to two phages phiKT1024 (OM249648) and Va1 (MK387337). The NCBI alignment results showed that the nucleotide sequence identity was 97% and 93%, respectively. In addition, proteomic tree analysis indicated that phage phiTY18, phiKT1024, and Va1 were belong to the same virus sub-cluster within . This study provides a theoretical basis for understanding the genomic characteristics and the interaction between phages and their host.

摘要

是一种常见的病原体,通常在水产养殖中用抗生素控制。值得注意的是,由于细菌耐药性的出现,传统的抗生素治疗变得不那么有效,因此需要找到新的策略来克服这一挑战。噬菌体是一类能裂解细菌的病毒,可以帮助我们控制耐药菌。在这项研究中,我们探索了一种从厦门沿海水中分离出来的新型噬菌体 phiTY18。透射电子显微镜显示,phiTY18 具有一个直径为 130.0±1.2nm 的二十面体头部和一个长度为 66.7±0.6nm 的收缩尾。噬菌体的效价在最佳 MOI(0.01)时可达到 7.2×10 PFU/mL。噬菌体 phiTY18 对热、酸、碱有一定的耐受性。在 50°C(pH7.0,1h)时,存活噬菌体达到 1.28×10 PFU/mL,在 pH5-9(30°C,1h)时,存活噬菌体大于 6.37×10 PFU/mL。噬菌体一步生长曲线分析表明,其潜伏期为 10min,上升期为 10min,噬菌体的平均爆发量为 48PFU/细胞。基因组测序和分析表明,噬菌体 phiTY18 具有双链 DNA(191500bp),G+C 含量为 34.90%,包含 117 个开放阅读框(ORFs)和 24 个 tRNA。基于主要衣壳蛋白()的系统发育树显示,噬菌体 phiTY18(MW451250)与两个噬菌体 phiKT1024(OM249648)和 Va1(MK387337)高度相关。NCBI 比对结果显示,核苷酸序列的同一性分别为 97%和 93%。此外,蛋白质组树分析表明,phiTY18、phiKT1024 和 Va1 属于同一病毒亚群。本研究为了解噬菌体及其宿主之间的基因组特征和相互作用提供了理论依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29ef/9633966/6f49175664ee/fcimb-12-1035364-g001.jpg

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