Wang Kuanquan, Ma Chao
School of Computer Science and Technology, Biocomputing Research Center, Harbin Institute of Technology, Harbin, China.
Biomed Eng Online. 2016 Apr 14;15:39. doi: 10.1186/s12938-016-0153-6.
Accurate segmentation of anatomical structures in medical images is a critical step in the development of computer assisted intervention systems. However, complex image conditions, such as intensity inhomogeneity, noise and weak object boundary, often cause considerable difficulties in medical image segmentation. To cope with these difficulties, we propose a novel robust statistics driven volume-scalable active contour framework, to extract desired object boundary from magnetic resonance (MR) and computed tomography (CT) imagery in 3D.
We define an energy functional in terms of the initial seeded labels and two fitting functions that are derived from object local robust statistics features. This energy is then incorporated into a level set scheme which drives the active contour evolving and converging at the desired position of the object boundary. Due to the local robust statistics and the volume scaling function in the energy fitting term, the object features in local volumes are learned adaptively to guide the motion of the contours, which thereby guarantees the capability of our method to cope with intensity inhomogeneity, noise and weak boundary. In addition, the initialization of active contour is simplified by select several seeds in the object and/or background to eliminate the sensitivity to initialization.
The proposed method was applied to extensive public available volumetric medical images with challenging image conditions. The segmentation results of various anatomical structures, such as white matter (WM), atrium, caudate nucleus and brain tumor, were evaluated quantitatively by comparing with the corresponding ground truths. It was found that the proposed method achieves consistent and coherent segmentation accuracy of 0.9246 ± 0.0068 for WM, 0.9043 ± 0.0131 for liver tumors, 0.8725 ± 0.0374 for caudate nucleus, 0.8802 ± 0.0595 for brain tumors, etc., measured by Dice similarity coefficients value for the overlap between the algorithm one and the ground truth. Further comparative experimental results showed desirable performances of the proposed method over several well-known segmentation methods in terms of accuracy and robustness.
We proposed an approach to accurate segment volumetric medical images with complex conditions. The accuracy of segmentation, robustness to noise and contour initialization were validated on the basis of extensive MR and CT volumes.
医学图像中解剖结构的精确分割是计算机辅助干预系统开发中的关键步骤。然而,复杂的图像条件,如实度不均匀、噪声和微弱的物体边界,常常给医学图像分割带来相当大的困难。为了应对这些困难,我们提出了一种新颖的基于鲁棒统计的体积可扩展活动轮廓框架,用于从三维磁共振(MR)和计算机断层扫描(CT)图像中提取所需的物体边界。
我们根据初始种子标签和两个从物体局部鲁棒统计特征导出的拟合函数定义一个能量泛函。然后将该能量纳入水平集方案,驱动活动轮廓在物体边界的期望位置演化和收敛。由于能量拟合项中的局部鲁棒统计和体积缩放函数,局部体积中的物体特征被自适应学习以指导轮廓的运动,从而保证了我们的方法应对实度不均匀、噪声和弱边界的能力。此外,通过在物体和/或背景中选择几个种子来简化活动轮廓的初始化,以消除对初始化的敏感性。
所提出的方法应用于具有挑战性图像条件的大量公开可用的体积医学图像。通过与相应的地面真值进行比较,对各种解剖结构,如白质(WM)、心房、尾状核和脑肿瘤的分割结果进行了定量评估。发现所提出的方法对于WM实现了一致且连贯的分割精度,Dice相似系数值为0.9246±0.0068,对于肝肿瘤为0.9043±0.0131,对于尾状核为0.8725±0.0374,对于脑肿瘤为0.8802±0.0595等,该值用于衡量算法分割结果与地面真值之间的重叠。进一步的对比实验结果表明,在所提出的方法在准确性和鲁棒性方面优于几种著名的分割方法。
我们提出了一种在复杂条件下精确分割体积医学图像的方法。基于大量的MR和CT体积数据,验证了分割的准确性、对噪声的鲁棒性和轮廓初始化。