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异质稀疏性下的正则化分位数回归及其在数量遗传性状中的应用

Regularized quantile regression under heterogeneous sparsity with application to quantitative genetic traits.

作者信息

He Qianchuan, Kong Linglong, Wang Yanhua, Wang Sijian, Chan Timothy A, Holland Eric

机构信息

Public Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.

Department of Mathematical and Statistical Sciences, University of Alberta, Edmonton, AB, Canada T6G 2G1.

出版信息

Comput Stat Data Anal. 2016 Mar;95:222-239. doi: 10.1016/j.csda.2015.10.007. Epub 2015 Oct 24.

Abstract

Genetic studies often involve quantitative traits. Identifying genetic features that influence quantitative traits can help to uncover the etiology of diseases. Quantile regression method considers the conditional quantiles of the response variable, and is able to characterize the underlying regression structure in a more comprehensive manner. On the other hand, genetic studies often involve high-dimensional genomic features, and the underlying regression structure may be heterogeneous in terms of both effect sizes and sparsity. To account for the potential genetic heterogeneity, including the heterogeneous sparsity, a regularized quantile regression method is introduced. The theoretical property of the proposed method is investigated, and its performance is examined through a series of simulation studies. A real dataset is analyzed to demonstrate the application of the proposed method.

摘要

基因研究通常涉及数量性状。识别影响数量性状的遗传特征有助于揭示疾病的病因。分位数回归方法考虑响应变量的条件分位数,能够更全面地表征潜在的回归结构。另一方面,基因研究通常涉及高维基因组特征,并且潜在的回归结构在效应大小和稀疏性方面可能是异质的。为了考虑潜在的遗传异质性,包括异质稀疏性,引入了一种正则化分位数回归方法。研究了所提方法的理论性质,并通过一系列模拟研究检验了其性能。分析了一个真实数据集以证明所提方法的应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2df7/5267342/4da08dcb5ebd/nihms807036f1.jpg

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