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使用分层多层随机块模型对网络层进行聚类

Clustering network layers with the strata multilayer stochastic block model.

作者信息

Stanley Natalie, Shai Saray, Taylor Dane, Mucha Peter J

机构信息

Curriculum in Bioinformatics and Computational Biology, University of North Carolina, Chapel Hill.

Carolina Center for Interdisciplinary Applied Mathematics, Department of Mathematics, University of North Carolina, Chapel Hill.

出版信息

IEEE Trans Netw Sci Eng. 2016 Apr-Jun;3(2):95-105. doi: 10.1109/TNSE.2016.2537545. Epub 2016 Mar 25.

Abstract

Multilayer networks are a useful data structure for simultaneously capturing multiple types of relationships between a set of nodes. In such networks, each relational definition gives rise to a layer. While each layer provides its own set of information, community structure across layers can be collectively utilized to discover and quantify underlying relational patterns between nodes. To concisely extract information from a multilayer network, we propose to identify and combine sets of layers with meaningful similarities in community structure. In this paper, we describe the "strata multilayer stochastic block model" (sMLSBM), a probabilistic model for multilayer community structure. The central extension of the model is that there exist groups of layers, called "strata", which are defined such that all layers in a given stratum have community structure described by a common stochastic block model (SBM). That is, layers in a stratum exhibit similar node-to-community assignments and SBM probability parameters. Fitting the sMLSBM to a multilayer network provides a joint clustering that yields node-to-community and layer-to-stratum assignments, which cooperatively aid one another during inference. We describe an algorithm for separating layers into their appropriate strata and an inference technique for estimating the SBM parameters for each stratum. We demonstrate our method using synthetic networks and a multilayer network inferred from data collected in the Human Microbiome Project.

摘要

多层网络是一种有用的数据结构,可用于同时捕捉一组节点之间的多种关系类型。在这样的网络中,每个关系定义都会产生一个层。虽然每个层都提供其自己的一组信息,但跨层的社区结构可以共同用于发现和量化节点之间潜在的关系模式。为了从多层网络中简洁地提取信息,我们建议识别并组合在社区结构上具有有意义相似性的层集。在本文中,我们描述了“分层多层随机块模型”(sMLSBM),这是一种用于多层社区结构的概率模型。该模型的核心扩展是存在称为“层”的层组,其定义为使得给定层中的所有层都具有由共同的随机块模型(SBM)描述的社区结构。也就是说,一个层中的层表现出相似的节点到社区分配和SBM概率参数。将sMLSBM应用于多层网络可提供联合聚类,从而产生节点到社区和层到层的分配,在推理过程中它们相互协作。我们描述了一种将层分离到其适当层的算法以及一种用于估计每个层的SBM参数的推理技术。我们使用合成网络和从人类微生物组计划收集的数据推断出的多层网络来展示我们的方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3593/5400296/03a4490c9aa6/nihms829895f1.jpg

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