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本文引用的文献

1
The adaptation rate of a quantitative trait in an environmental gradient.环境梯度中数量性状的适应率。
Phys Biol. 2016 Nov 30;13(6):065003. doi: 10.1088/1478-3975/13/6/065003.
2
Optimising Antibiotic Usage to Treat Bacterial Infections.优化抗生素使用以治疗细菌感染。
Sci Rep. 2016 Nov 28;6:37853. doi: 10.1038/srep37853.
3
Excess of mutational jackpot events in expanding populations revealed by spatial Luria-Delbrück experiments.扩张种群中突变“ jackpot ”事件过剩的空间卢里亚-德尔布吕克实验揭示。
Nat Commun. 2016 Oct 3;7:12760. doi: 10.1038/ncomms12760.
4
Effect of flow and peristaltic mixing on bacterial growth in a gut-like channel.流动和蠕动混合对类肠道通道中细菌生长的影响。
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Spatiotemporal microbial evolution on antibiotic landscapes.抗生素环境下的时空微生物进化
Science. 2016 Sep 9;353(6304):1147-51. doi: 10.1126/science.aag0822.
6
Antibiotic resistance: a physicist's view.抗生素耐药性:一位物理学家的视角。
Phys Biol. 2016 Aug 11;13(4):045001. doi: 10.1088/1478-3975/13/4/045001.
7
Allele surfing promotes microbial adaptation from standing variation.等位基因冲浪促进微生物通过现有变异实现适应。
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A platform for the discovery of new macrolide antibiotics.一个用于发现新型大环内酯类抗生素的平台。
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9
Exploiting evolutionary principles to prolong tumor control in preclinical models of breast cancer.利用进化原理延长乳腺癌临床前模型中的肿瘤控制时间。
Sci Transl Med. 2016 Feb 24;8(327):327ra24. doi: 10.1126/scitranslmed.aad7842.
10
The mechanical world of bacteria.细菌的机械世界。
Cell. 2015 May 21;161(5):988-997. doi: 10.1016/j.cell.2015.05.005.

对流在空间梯度中塑造了抗生素疗效与耐药性选择之间的权衡。

Convection shapes the trade-off between antibiotic efficacy and the selection for resistance in spatial gradients.

作者信息

Gralka Matti, Fusco Diana, Martis Stephen, Hallatschek Oskar

机构信息

Department of Physics, University of California, Berkeley, CA 94720, United States of America.

出版信息

Phys Biol. 2017 Jul 19;14(4):045011. doi: 10.1088/1478-3975/aa7bb3.

DOI:10.1088/1478-3975/aa7bb3
PMID:28649977
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5728155/
Abstract

Since penicillin was discovered about 90 years ago, we have become used to using drugs to eradicate unwanted pathogenic cells. However, using drugs to kill bacteria, viruses or cancer cells has the serious side effect of selecting for mutant types that survive the drug attack. A crucial question therefore is how one could eradicate as many cells as possible for a given acceptable risk of drug resistance evolution. We address this general question in a model of drug resistance evolution in spatial drug gradients, which recent experiments and theories have suggested as key drivers of drug resistance. Importantly, our model takes into account the influence of convection, resulting for instance from blood flow. Using stochastic simulations, we study the fates of individual resistance mutations and quantify the trade-off between the killing of wild-type cells and the rise of resistance mutations: shallow gradients and convection into the antibiotic region promote wild-type death, at the cost of increasing the establishment probability of resistance mutations. We can explain these observed trends by modeling the adaptation process as a branching random walk. Our analysis reveals that the trade-off between death and adaptation depends on the relative length scales of the spatial drug gradient and random dispersal, and the strength of convection. Our results show that convection can have a momentous effect on the rate of establishment of new mutations, and may heavily impact the efficiency of antibiotic treatment.

摘要

自约90年前青霉素被发现以来,我们已习惯于使用药物来根除有害的致病细胞。然而,使用药物杀死细菌、病毒或癌细胞存在严重的副作用,即会选择出在药物攻击下存活的突变类型。因此,一个关键问题是,在给定的耐药性进化可接受风险下,如何尽可能多地根除细胞。我们在空间药物梯度中的耐药性进化模型中解决这个一般性问题,近期的实验和理论表明空间药物梯度是耐药性的关键驱动因素。重要的是,我们的模型考虑了例如由血流引起的对流的影响。通过随机模拟,我们研究了单个耐药性突变的命运,并量化了杀死野生型细胞与耐药性突变出现之间的权衡:浅梯度和向抗生素区域的对流促进野生型细胞死亡,但代价是增加了耐药性突变的建立概率。我们可以通过将适应过程建模为分支随机游走来说明这些观察到的趋势。我们的分析表明,死亡与适应之间的权衡取决于空间药物梯度和随机扩散的相对长度尺度以及对流的强度。我们的结果表明,对流可能对新突变的建立速率产生重大影响,并可能严重影响抗生素治疗的效率。