• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

在自组装的 3D DNA 晶体内部运行的设备。

A device that operates within a self-assembled 3D DNA crystal.

机构信息

Department of Chemistry, New York University, New York 10003, USA.

Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, USA.

出版信息

Nat Chem. 2017 Aug;9(8):824-827. doi: 10.1038/nchem.2745. Epub 2017 Mar 14.

DOI:10.1038/nchem.2745
PMID:28754940
Abstract

Structural DNA nanotechnology finds applications in numerous areas, but the construction of objects, 2D and 3D crystalline lattices and devices is prominent among them. Each of these components has been developed individually, and most of them have been combined in pairs. However, to date there are no reports of independent devices contained within 3D crystals. Here we report a three-state 3D device whereby we change the colour of the crystals by diffusing strands that contain dyes in or out of the crystals through the mother-liquor component of the system. Each colouring strand is designed to pair with an extended triangle strand by Watson-Crick base pairing. The arm that contains the dyes is quite flexible, but it is possible to establish the presence of the duplex proximal to the triangle by X-ray crystallography. We modelled the transition between the red and blue states through a simple kinetic model.

摘要

结构 DNA 纳米技术在许多领域都有应用,但其中突出的是构建物体、2D 和 3D 晶体格子和器件。这些组件中的每一个都已经被单独开发,其中大多数已经被成对地组合在一起。然而,迄今为止,还没有报道在 3D 晶体中包含独立的器件。在这里,我们报告了一个三态 3D 器件,通过扩散包含染料的链,我们可以通过系统的母液成分将染料在晶体内外扩散,从而改变晶体的颜色。每个染色链都设计成通过 Watson-Crick 碱基配对与扩展的三角形链配对。含有染料的臂非常灵活,但通过 X 射线晶体学可以确定在三角形附近存在双链体。我们通过一个简单的动力学模型来模拟红色和蓝色状态之间的转变。

相似文献

1
A device that operates within a self-assembled 3D DNA crystal.在自组装的 3D DNA 晶体内部运行的设备。
Nat Chem. 2017 Aug;9(8):824-827. doi: 10.1038/nchem.2745. Epub 2017 Mar 14.
2
Self-Assembly of a 3D DNA Crystal Structure with Rationally Designed Six-Fold Symmetry.具有合理设计的六重对称性的 3D DNA 晶体结构的自组装。
Angew Chem Int Ed Engl. 2018 Sep 17;57(38):12504-12507. doi: 10.1002/anie.201807223. Epub 2018 Aug 27.
3
Highly Symmetric, Self-Assembling 3D DNA Crystals with Cubic and Trigonal Lattices.具有立方和三角晶格的高度对称、自组装三维DNA晶体。
Small. 2023 Jan;19(3):e2205830. doi: 10.1002/smll.202205830. Epub 2022 Nov 21.
4
Probing the role of sequence in the assembly of three-dimensional DNA crystals.探究序列在三维DNA晶体组装中的作用。
Biopolymers. 2015 Nov;103(11):618-26. doi: 10.1002/bip.22688.
5
The Formation and Displacement of Ordered DNA Triplexes in Self-Assembled Three-Dimensional DNA Crystals.有序 DNA 三聚体在自组装三维 DNA 晶体中的形成和位移。
J Am Chem Soc. 2023 Feb 15;145(6):3599-3605. doi: 10.1021/jacs.2c12667. Epub 2023 Feb 2.
6
Impact of Heterogeneity and Lattice Bond Strength on DNA Triangle Crystal Growth.异质性和晶格键强度对DNA三角形晶体生长的影响。
ACS Nano. 2016 Oct 25;10(10):9156-9164. doi: 10.1021/acsnano.6b04787. Epub 2016 Sep 7.
7
Three-dimensional DNA crystals with pH-responsive noncanonical junctions.具有 pH 响应非规范连接的三维 DNA 晶体。
J Am Chem Soc. 2012 Aug 1;134(30):12557-64. doi: 10.1021/ja3025033. Epub 2012 Jul 18.
8
A DNA crystal designed to contain two molecules per asymmetric unit.一种设计用于每个不对称单位包含两个分子的 DNA 晶体。
J Am Chem Soc. 2010 Nov 10;132(44):15471-3. doi: 10.1021/ja104833t.
9
Construction and Structure Determination of a Three-Dimensional DNA Crystal.三维 DNA 晶体的构建与结构测定。
J Am Chem Soc. 2016 Aug 10;138(31):10047-54. doi: 10.1021/jacs.6b06508. Epub 2016 Aug 2.
10
Crystal structure of a continuous three-dimensional DNA lattice.连续三维DNA晶格的晶体结构。
Chem Biol. 2004 Aug;11(8):1119-26. doi: 10.1016/j.chembiol.2004.05.021.

引用本文的文献

1
Controlling the Hierarchical Assembly of DNA-Based Hexagonal Microstructures.控制基于DNA的六边形微结构的分层组装。
Small. 2025 Feb;21(6):e2410243. doi: 10.1002/smll.202410243. Epub 2024 Dec 23.
2
Electrochemical Quantification of miRNA Based on Strain-Promoted Azide-Alkyne Cycloaddition Ligated Tetrahedral DNA Nanotags.基于应变促进的叠氮化物-炔烃环加成连接的四面体DNA纳米标签的miRNA电化学定量分析
Anal Chem. 2024 Dec 31;96(52):20348-20353. doi: 10.1021/acs.analchem.4c04744. Epub 2024 Dec 19.
3
Crystalline Assemblies of DNA Nanostructures and Their Functional Properties.

本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.振荡模式下收集的X射线衍射数据的处理。
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
Self-assembled DNA crystals: the impact on resolution of 5'-phosphates and the DNA source.自组装 DNA 晶体:5'-磷酸酯和 DNA 来源对分辨率的影响。
Nano Lett. 2013 Feb 13;13(2):793-7. doi: 10.1021/nl304550c. Epub 2013 Jan 22.
3
The absence of tertiary interactions in a self-assembled DNA crystal structure.自组装 DNA 晶体结构中不存在三级相互作用。
DNA纳米结构的晶体组装及其功能特性。
Angew Chem Int Ed Engl. 2025 Jan 15;64(3):e202416948. doi: 10.1002/anie.202416948. Epub 2024 Dec 4.
4
Creation of Metal-Complex-Integrated Tensegrity Triangle DNA Crystals.金属配合物整合的张拉整体三角形 DNA 晶体的构建。
Molecules. 2024 Oct 1;29(19):4674. doi: 10.3390/molecules29194674.
5
Programming crystallization kinetics of self-assembled DNA crystals with 5-methylcytosine modification.用 5-甲基胞嘧啶修饰来编程自组装 DNA 晶体的结晶动力学。
Proc Natl Acad Sci U S A. 2024 Mar 12;121(11):e2312596121. doi: 10.1073/pnas.2312596121. Epub 2024 Mar 4.
6
Exploring the Potential of Three-Dimensional DNA Crystals in Nanotechnology: Design, Optimization, and Applications.探索三维 DNA 晶体在纳米技术中的潜力:设计、优化与应用。
Adv Sci (Weinh). 2023 Aug;10(24):e2302021. doi: 10.1002/advs.202302021. Epub 2023 Jun 16.
7
Recent Advances in DNA Origami-Engineered Nanomaterials and Applications.DNA 折纸工程纳米材料及其应用的最新进展。
Chem Rev. 2023 Apr 12;123(7):3976-4050. doi: 10.1021/acs.chemrev.3c00028. Epub 2023 Mar 29.
8
The Formation and Displacement of Ordered DNA Triplexes in Self-Assembled Three-Dimensional DNA Crystals.有序 DNA 三聚体在自组装三维 DNA 晶体中的形成和位移。
J Am Chem Soc. 2023 Feb 15;145(6):3599-3605. doi: 10.1021/jacs.2c12667. Epub 2023 Feb 2.
9
Mechanical deformation behaviors and structural properties of ligated DNA crystals.结扎 DNA 晶体的力学变形行为和结构特性。
Biophys J. 2022 Nov 1;121(21):4078-4090. doi: 10.1016/j.bpj.2022.09.036. Epub 2022 Sep 30.
10
The wending rhombus: Self-assembling 3D DNA crystals.蜿蜒的菱形:自组装的 3D DNA 晶体。
Biophys J. 2022 Dec 20;121(24):4759-4765. doi: 10.1016/j.bpj.2022.08.019. Epub 2022 Aug 24.
J Mol Recognit. 2012 Apr;25(4):234-7. doi: 10.1002/jmr.2183.
4
A DNA crystal designed to contain two molecules per asymmetric unit.一种设计用于每个不对称单位包含两个分子的 DNA 晶体。
J Am Chem Soc. 2010 Nov 10;132(44):15471-3. doi: 10.1021/ja104833t.
5
A proximity-based programmable DNA nanoscale assembly line.基于接近度的可编程 DNA 纳米尺度装配线。
Nature. 2010 May 13;465(7295):202-5. doi: 10.1038/nature09026.
6
Control of DNA strand displacement kinetics using toehold exchange.利用链置换反应控制 DNA 链位移动力学。
J Am Chem Soc. 2009 Dec 2;131(47):17303-14. doi: 10.1021/ja906987s.
7
From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal.通过自组装三维DNA晶体的合理设计,从分子层面到宏观层面。
Nature. 2009 Sep 3;461(7260):74-7. doi: 10.1038/nature08274.
8
Dynamic patterning programmed by DNA tiles captured on a DNA origami substrate.由捕获在DNA折纸基板上的DNA瓦片编程的动态图案化。
Nat Nanotechnol. 2009 Apr;4(4):245-8. doi: 10.1038/nnano.2009.5. Epub 2009 Feb 15.
9
A bipedal DNA Brownian motor with coordinated legs.一种具有协同腿部的双足DNA布朗运动器。
Science. 2009 Apr 3;324(5923):67-71. doi: 10.1126/science.1170336.
10
A DNA-based nanomechanical device with three robust states.一种具有三种稳定状态的基于DNA的纳米机械设备。
Proc Natl Acad Sci U S A. 2008 Nov 11;105(45):17245-9. doi: 10.1073/pnas.0707681105. Epub 2008 May 12.