Jargalmaa Suldbold, Eimes John A, Park Myung Soo, Park Jae Young, Oh Seung-Yoon, Lim Young Woon
School of Biological Sciences, Seoul National University, Seoul, South Korea.
University College, Sungkyunkwan University, Suwon, South Korea.
PeerJ. 2017 Jul 27;5:e3596. doi: 10.7717/peerj.3596. eCollection 2017.
Species in the genus include several ecologically important and pathogenic fungal species whose medicinal and economic value is substantial. Due to the highly similar morphological features within the , identification of species has relied heavily on DNA sequencing using BLAST searches, which are only reliable if the GenBank submissions are accurately labeled. In this study, we examined 113 specimens collected from 1969 to 2016 from various regions in Korea using morphological features and multigene analysis (internal transcribed spacer, translation elongation factor 1-, and the second largest subunit of RNA polymerase II). These specimens were identified as four species: , cf. , cf. , and cf. . With the exception of , these species were difficult to distinguish based solely on morphological features. However, phylogenetic analysis at three different loci yielded concordant phylogenetic information, and supported the four species distinctions with high bootstrap support. A survey of over 600 sequences available on GenBank revealed that 65% of sequences were either misidentified or ambiguously labeled. Here, we suggest corrected annotations for GenBank sequences based on our phylogenetic validation and provide updated global distribution patterns for these species.
该属中的物种包括几种具有重要生态意义和致病性的真菌物种,它们具有巨大的药用和经济价值。由于该属内形态特征高度相似,物种鉴定严重依赖于使用BLAST搜索的DNA测序,只有在GenBank提交的序列准确标记的情况下,这种方法才可靠。在本研究中,我们使用形态特征和多基因分析(内部转录间隔区、翻译延伸因子1-α和RNA聚合酶II的第二大亚基)检查了1969年至2016年从韩国不同地区收集的113个标本。这些标本被鉴定为四个物种:、cf.、cf.和cf.。除了之外,仅根据形态特征很难区分这些物种。然而,在三个不同位点的系统发育分析产生了一致的系统发育信息,并以高自展支持率支持了这四个物种的区分。对GenBank上超过600个序列的调查显示,65%的序列被错误鉴定或标记不明确。在此,我们根据系统发育验证为GenBank序列提出了校正注释,并提供了这些物种更新的全球分布模式。