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从电极和四极管记录中分类重叠的尖峰波形。

Sorting Overlapping Spike Waveforms from Electrode and Tetrode Recordings.

作者信息

Mokri Yasamin, Salazar Rodrigo F, Goodell Baldwin, Baker Jonathan, Gray Charles M, Yen Shih-Cheng

机构信息

Department of Electrical and Computer Engineering, National University of SingaporeSingapore, Singapore.

Department of Cell Biology and Neuroscience, Montana State University, BozemanMT, United States.

出版信息

Front Neuroinform. 2017 Aug 17;11:53. doi: 10.3389/fninf.2017.00053. eCollection 2017.

Abstract

One of the outstanding problems in the sorting of neuronal spike trains is the resolution of overlapping spikes. Resolving these spikes can significantly improve a range of analyses, such as response variability, correlation, and latency. In this paper, we describe a partially automated method that is capable of resolving overlapping spikes. After constructing template waveforms for well-isolated and distinct single units, we generated pair-wise combinations of those templates at all possible time shifts from each other. Subsequently, overlapping waveforms were identified by cluster analysis, and then assigned to their respective single-unit combinations. We examined the performance of this method using simulated data from an earlier study, and found that we were able to resolve an average of 83% of the overlapping waveforms across various signal-to-noise ratios, an improvement of approximately 32% over the results reported in the earlier study. When applied to additional simulated data sets generated from single-electrode and tetrode recordings, we were able to resolve 91% of the overlapping waveforms with a false positive rate of 0.19% for single-electrode data, and 95% of the overlapping waveforms with a false positive rate of 0.27% for tetrode data. We also applied our method to electrode and tetrode data recorded from the primary visual cortex, and the results obtained for these datasets suggest that our method provides an efficient means of sorting overlapping waveforms. This method can easily be added as an extra step to commonly used spike sorting methods, such as KlustaKwik and MClust software packages, and can be applied to datasets that have already been sorted using these methods.

摘要

神经元尖峰序列分类中一个突出的问题是重叠尖峰的分辨。分辨这些尖峰可以显著改善一系列分析,如反应变异性、相关性和潜伏期。在本文中,我们描述了一种能够分辨重叠尖峰的部分自动化方法。在为分离良好且不同的单个单元构建模板波形后,我们生成了这些模板在彼此所有可能时间偏移下的成对组合。随后,通过聚类分析识别重叠波形,然后将其分配到各自的单个单元组合中。我们使用早期研究中的模拟数据检验了该方法的性能,发现我们能够在各种信噪比下平均分辨83%的重叠波形,比早期研究报告的结果提高了约32%。当应用于从单电极和四极记录生成的其他模拟数据集时,对于单电极数据,我们能够分辨91%的重叠波形,误报率为0.19%;对于四极数据,能够分辨95%的重叠波形,误报率为0.27%。我们还将我们的方法应用于从初级视觉皮层记录的电极和四极数据,这些数据集获得的结果表明我们的方法提供了一种分辨重叠波形的有效手段。该方法可以很容易地作为一个额外步骤添加到常用的尖峰分类方法中,如KlustaKwik和MClust软件包,并且可以应用于已经使用这些方法分类的数据集。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eb0e/5562672/c35c7b8876e9/fninf-11-00053-g001.jpg

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