• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用单细胞多组学方法解析肿瘤异质性。

Using single-cell multiple omics approaches to resolve tumor heterogeneity.

作者信息

Ortega Michael A, Poirion Olivier, Zhu Xun, Huang Sijia, Wolfgruber Thomas K, Sebra Robert, Garmire Lana X

机构信息

Cancer Epidemiology Program, University of Hawaii Cancer Center, Honolulu, HI, USA.

Department of Molecular Biosciences and Bioengineering, Honolulu, HI, USA.

出版信息

Clin Transl Med. 2017 Dec 28;6(1):46. doi: 10.1186/s40169-017-0177-y.

DOI:10.1186/s40169-017-0177-y
PMID:29285690
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5746494/
Abstract

It has become increasingly clear that both normal and cancer tissues are composed of heterogeneous populations. Genetic variation can be attributed to the downstream effects of inherited mutations, environmental factors, or inaccurately resolved errors in transcription and replication. When lesions occur in regions that confer a proliferative advantage, it can support clonal expansion, subclonal variation, and neoplastic progression. In this manner, the complex heterogeneous microenvironment of a tumour promotes the likelihood of angiogenesis and metastasis. Recent advances in next-generation sequencing and computational biology have utilized single-cell applications to build deep profiles of individual cells that are otherwise masked in bulk profiling. In addition, the development of new techniques for combining single-cell multi-omic strategies is providing a more precise understanding of factors contributing to cellular identity, function, and growth. Continuing advancements in single-cell technology and computational deconvolution of data will be critical for reconstructing patient specific intra-tumour features and developing more personalized cancer treatments.

摘要

越来越明显的是,正常组织和癌组织均由异质性群体组成。遗传变异可归因于遗传突变的下游效应、环境因素,或转录和复制中未准确解决的错误。当病变发生在赋予增殖优势的区域时,它可支持克隆扩增、亚克隆变异和肿瘤进展。通过这种方式,肿瘤复杂的异质性微环境增加了血管生成和转移的可能性。下一代测序和计算生物学的最新进展已利用单细胞应用来构建单个细胞的深度图谱,而这些图谱在整体分析中会被掩盖。此外,结合单细胞多组学策略的新技术的发展正在提供对促成细胞身份、功能和生长的因素更精确的理解。单细胞技术和数据计算反卷积的持续进步对于重建患者特异性肿瘤内特征和开发更个性化的癌症治疗至关重要。

相似文献

1
Using single-cell multiple omics approaches to resolve tumor heterogeneity.使用单细胞多组学方法解析肿瘤异质性。
Clin Transl Med. 2017 Dec 28;6(1):46. doi: 10.1186/s40169-017-0177-y.
2
Advancements and applications of single-cell multi-omics techniques in cancer research: Unveiling heterogeneity and paving the way for precision therapeutics.单细胞多组学技术在癌症研究中的进展与应用:揭示异质性并为精准治疗铺平道路。
Biochem Biophys Rep. 2023 Nov 29;37:101589. doi: 10.1016/j.bbrep.2023.101589. eCollection 2024 Mar.
3
Multi-site tumor sampling highlights molecular intra-tumor heterogeneity in malignant pleural mesothelioma.多部位肿瘤取样突出了恶性胸膜间皮瘤的肿瘤内分子异质性。
Genome Med. 2021 Jul 14;13(1):113. doi: 10.1186/s13073-021-00931-w.
4
Cell subpopulation deconvolution reveals breast cancer heterogeneity based on DNA methylation signature.细胞亚群反卷积基于DNA甲基化特征揭示乳腺癌异质性。
Brief Bioinform. 2017 May 1;18(3):426-440. doi: 10.1093/bib/bbw028.
5
Intra-tumour heterogeneity - going beyond genetics.肿瘤内异质性——超越遗传学
FEBS J. 2016 Jun;283(12):2245-58. doi: 10.1111/febs.13705. Epub 2016 Apr 1.
6
Advances in bulk and single-cell multi-omics approaches for systems biology and precision medicine.系统生物学和精准医学中基于体和单细胞的多组学方法的进展。
Brief Bioinform. 2021 Sep 2;22(5). doi: 10.1093/bib/bbab024.
7
Advances for studying clonal evolution in cancer.癌症克隆进化研究进展。
Cancer Lett. 2013 Nov 1;340(2):212-9. doi: 10.1016/j.canlet.2012.12.028. Epub 2013 Jan 23.
8
Towards artificial intelligence to multi-omics characterization of tumor heterogeneity in esophageal cancer.迈向用于食管癌肿瘤异质性多组学表征的人工智能
Semin Cancer Biol. 2023 Jun;91:35-49. doi: 10.1016/j.semcancer.2023.02.009. Epub 2023 Mar 1.
9
Single-cell omics traces the heterogeneity of prostate cancer cells and the tumor microenvironment.单细胞组学追踪前列腺癌细胞和肿瘤微环境的异质性。
Cell Mol Biol Lett. 2023 May 9;28(1):38. doi: 10.1186/s11658-023-00450-z.
10
Single-Cell Ssequencing in Cancer: Recent Applications to Immunogenomics and Multi-omics Tools.癌症中的单细胞测序:免疫基因组学和多组学工具的最新应用
Genomics Inform. 2018 Dec;16(4):e17. doi: 10.5808/GI.2018.16.4.e17. Epub 2018 Dec 28.

引用本文的文献

1
An update review of the application of single-cell RNA sequencing in pregnancy-related diseases.单细胞RNA测序在妊娠相关疾病中的应用最新综述
Front Endocrinol (Lausanne). 2024 Dec 9;15:1415173. doi: 10.3389/fendo.2024.1415173. eCollection 2024.
2
Molecular and functional profiling of primary normal ovarian cells defines insights into cancer development and drug responses.原发性正常卵巢细胞的分子和功能分析为癌症发展和药物反应提供了见解。
Mol Ther Oncol. 2024 Nov 8;32(4):200903. doi: 10.1016/j.omton.2024.200903. eCollection 2024 Dec 19.
3
Towards verifiable cancer digital twins: tissue level modeling protocol for precision medicine.

本文引用的文献

1
Using single nucleotide variations in single-cell RNA-seq to identify subpopulations and genotype-phenotype linkage.利用单细胞 RNA-seq 中的单核苷酸变异来鉴定亚群和基因型-表型关联。
Nat Commun. 2018 Nov 20;9(1):4892. doi: 10.1038/s41467-018-07170-5.
2
SCoPE-MS: mass spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation.SCoPE-MS:单细胞哺乳动物细胞的质谱分析定量了细胞分化过程中的蛋白质组异质性。
Genome Biol. 2018 Oct 22;19(1):161. doi: 10.1186/s13059-018-1547-5.
3
scRNASeqDB: A Database for RNA-Seq Based Gene Expression Profiles in Human Single Cells.
迈向可验证的癌症数字孪生:精准医学的组织水平建模协议
Front Physiol. 2024 Oct 23;15:1473125. doi: 10.3389/fphys.2024.1473125. eCollection 2024.
4
Serial single-cell RNA sequencing unveils drug resistance and metastatic traits in stage IV breast cancer.连续单细胞RNA测序揭示IV期乳腺癌的耐药性和转移特征。
NPJ Precis Oncol. 2024 Oct 3;8(1):222. doi: 10.1038/s41698-024-00723-6.
5
Resolving tumor evolution: a phylogenetic approach.解析肿瘤进化:一种系统发育学方法。
J Natl Cancer Cent. 2024 Mar 21;4(2):97-106. doi: 10.1016/j.jncc.2024.03.001. eCollection 2024 Jun.
6
Integration of Pan-Cancer Cell Line and Single-Cell Transcriptomic Profiles Enables Inference of Therapeutic Vulnerabilities in Heterogeneous Tumors.泛癌系和单细胞转录组谱的整合能够推断异质性肿瘤的治疗弱点。
Cancer Res. 2024 Jun 14;84(12):2021-2033. doi: 10.1158/0008-5472.CAN-23-3005.
7
Computational single cell oncology: state of the art.计算单细胞肿瘤学:现状
Front Genet. 2023 Nov 8;14:1256991. doi: 10.3389/fgene.2023.1256991. eCollection 2023.
8
Inferring therapeutic vulnerability within tumors through integration of pan-cancer cell line and single-cell transcriptomic profiles.通过整合泛癌细胞系和单细胞转录组图谱推断肿瘤内的治疗易感性。
bioRxiv. 2023 Nov 1:2023.10.29.564598. doi: 10.1101/2023.10.29.564598.
9
Establishment and characterization of a recurrent malignant peripheral nerve sheath tumor cell line: RsNF.建立并鉴定一种复发性恶性外周神经鞘瘤细胞系:RsNF。
Hum Cell. 2024 Jan;37(1):345-355. doi: 10.1007/s13577-023-01000-7. Epub 2023 Nov 8.
10
ASGARD is A Single-cell Guided Pipeline to Aid Repurposing of Drugs.ASGARD 是一个单细胞指导管道,用于帮助药物的再利用。
Nat Commun. 2023 Feb 22;14(1):993. doi: 10.1038/s41467-023-36637-3.
scRNASeqDB:一个用于人类单细胞中基于RNA测序的基因表达谱的数据库。
Genes (Basel). 2017 Dec 5;8(12):368. doi: 10.3390/genes8120368.
4
Granatum: a graphical single-cell RNA-Seq analysis pipeline for genomics scientists.石榴石:一个用于基因组学科学家的图形单细胞 RNA-Seq 分析流程。
Genome Med. 2017 Dec 5;9(1):108. doi: 10.1186/s13073-017-0492-3.
5
Connecting the dots across time: reconstruction of single-cell signalling trajectories using time-stamped data.跨越时间连接各个点:使用带时间戳的数据重建单细胞信号传导轨迹。
R Soc Open Sci. 2017 Aug 23;4(8):170811. doi: 10.1098/rsos.170811. eCollection 2017 Aug.
6
Single-cell RNA sequencing to explore immune cell heterogeneity.单细胞 RNA 测序探索免疫细胞异质性。
Nat Rev Immunol. 2018 Jan;18(1):35-45. doi: 10.1038/nri.2017.76. Epub 2017 Aug 7.
7
Integrative clinical genomics of metastatic cancer.转移性癌症的整合临床基因组学
Nature. 2017 Aug 17;548(7667):297-303. doi: 10.1038/nature23306. Epub 2017 Aug 2.
8
histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data.histoCAT:多重图像细胞术数据中细胞表型和相互作用的分析
Nat Methods. 2017 Sep;14(9):873-876. doi: 10.1038/nmeth.4391. Epub 2017 Aug 7.
9
Simultaneous epitope and transcriptome measurement in single cells.单细胞中表位和转录组的同步测量。
Nat Methods. 2017 Sep;14(9):865-868. doi: 10.1038/nmeth.4380. Epub 2017 Jul 31.
10
Cell-cycle dynamics of chromosomal organization at single-cell resolution.单细胞分辨率下染色体组织的细胞周期动力学
Nature. 2017 Jul 5;547(7661):61-67. doi: 10.1038/nature23001.