Department of Public Health and Infectious Diseases, Sapienza University of Rome, Rome, Italy.
Department of Veterinary Medicine, University of Cambridge, Cambridge, UK.
Parasit Vectors. 2018 Jan 10;11(1):31. doi: 10.1186/s13071-017-2585-7.
Larval stages of the sibling species of parasitic nematodes Anisakis simplex (sensu stricto) (s.s.) (AS) and Anisakis pegreffii (AP) are responsible for a fish-borne zoonosis, known as anisakiasis, that humans aquire via the ingestion of raw or undercooked infected fish or fish-based products. These two species differ in geographical distribution, genetic background and peculiar traits involved in pathogenicity. However, thus far little is known of key molecules potentially involved in host-parasite interactions. Here, high-throughput RNA-Seq and bioinformatics analyses of sequence data were applied to the characterization of the whole sets of transcripts expressed by infective larvae of AS and AP, as well as of their pharyngeal tissues, in a bid to identify transcripts potentially involved in tissue invasion and host-pathogen interplay.
Approximately 34,000,000 single-end reads were generated from cDNA libraries for each species. Transcripts identified in AS and AP encoded 19,403 and 10,424 putative peptides, respectively, and were classified based on homology searches, protein motifs, gene ontology and biological pathway mapping. Differential gene expression analysis yielded 226 and 339 transcripts upregulated in the pharyngeal regions of AS and AP, respectively, compared with their corresponding whole-larvae datasets. These included proteolytic enzymes, molecules encoding anesthetics, inhibitors of primary hemostasis and virulence factors, anticoagulants and immunomodulatory peptides.
This work provides the scientific community with a list of key transcripts expressed by AS and AP pharyngeal tissues and corresponding annotation information which represents a ready-to-use resource for future functional studies of biological pathways specifically involved in host-parasite interplay.
寄生性线虫 Anisakis simplex(严格意义上)(AS)和 Anisakis pegreffii(AP)的幼虫阶段是一种鱼类传播的人畜共患病,称为异尖线虫病,人类通过摄入生的或未煮熟的受感染的鱼类或鱼制品而感染该病。这两个物种在地理分布、遗传背景和与致病性相关的特殊特征上存在差异。然而,迄今为止,人们对可能涉及宿主-寄生虫相互作用的关键分子知之甚少。在这里,高通量 RNA-Seq 和生物信息学分析应用于感染性 AS 和 AP 幼虫以及它们的咽组织的整套转录本的特征描述,以鉴定可能参与组织入侵和宿主-病原体相互作用的转录本。
从每个物种的 cDNA 文库中生成了大约 3400 万个单端reads。AS 和 AP 鉴定的转录本分别编码了 19403 和 10424 个推定肽,并根据同源性搜索、蛋白质基序、基因本体和生物途径映射进行了分类。差异基因表达分析显示,与相应的全幼虫数据集相比,AS 和 AP 的咽区分别有 226 和 339 个转录本上调。这些转录本包括蛋白酶、麻醉分子、初级止血抑制剂和毒力因子、抗凝剂和免疫调节肽。
这项工作为科学界提供了 AS 和 AP 咽组织表达的关键转录本列表及其注释信息,这代表了专门涉及宿主-寄生虫相互作用的生物途径的未来功能研究的现成资源。