Suppr超能文献

用于研究氧化还原活性酪氨酸的蛋白质中位点特异性掺入的3-氨基酪氨酸的性质:以大肠杆菌核糖核苷酸还原酶为例

Properties of Site-Specifically Incorporated 3-Aminotyrosine in Proteins To Study Redox-Active Tyrosines: Escherichia coli Ribonucleotide Reductase as a Paradigm.

作者信息

Lee Wankyu, Kasanmascheff Müge, Huynh Michael, Quartararo Anthony, Costentin Cyrille, Bejenke Isabel, Nocera Daniel G, Bennati Marina, Tommos Cecilia, Stubbe JoAnne

机构信息

Max Planck Institute for Biophysical Chemistry , Am Fassberg 11 , Göttingen , 37077 Germany.

Department of Chemistry and Chemical Biology , Harvard University , 12 Oxford Street , Cambridge , Massachusetts 02138 United States.

出版信息

Biochemistry. 2018 Jun 19;57(24):3402-3415. doi: 10.1021/acs.biochem.8b00160. Epub 2018 Apr 17.

Abstract

3-Aminotyrosine (NHY) has been a useful probe to study the role of redox active tyrosines in enzymes. This report describes properties of NHY of key importance for its application in mechanistic studies. By combining the tRNA/NHY-RS suppression technology with a model protein tailored for amino acid redox studies (αX, X = NHY), the formal reduction potential of NHY(O/OH) ( E°' = 395 ± 7 mV at pH 7.08 ± 0.05) could be determined using protein film voltammetry. We find that the Δ E°' between NHY(O/OH) and Y(O/OH) when measured under reversible conditions is ∼300-400 mV larger than earlier estimates based on irreversible voltammograms obtained on aqueous NHY and Y. We have also generated D-NHY-α2 of ribonucleotide reductase (RNR), which when incubated with β2/CDP/ATP generates the D-NHY-α2/β2 complex. By multifrequency electron paramagnetic resonance (35, 94, and 263 GHz) and 34 GHz H ENDOR spectroscopies, we determined the hyperfine coupling (hfc) constants of the amino protons that establish RNH planarity and thus minimal perturbation of the reduction potential by the protein environment. The amount of Y in the isolated NHY-RNR incorporated by infidelity of the tRNA/NHY-RS pair was determined by a generally useful LC-MS method. This information is essential to the utility of this NHY probe to study any protein of interest and is employed to address our previously reported activity associated with NHY-substituted RNRs.

摘要

3-氨基酪氨酸(NHY)一直是研究氧化还原活性酪氨酸在酶中作用的有用探针。本报告描述了NHY在机理研究中的应用至关重要的特性。通过将tRNA/NHY-RS抑制技术与为氨基酸氧化还原研究量身定制的模型蛋白(αX,X = NHY)相结合,可使用蛋白质膜伏安法测定NHY(O/OH)的形式还原电位(在pH 7.08±0.05时E°' = 395±7 mV)。我们发现,在可逆条件下测量时,NHY(O/OH)与Y(O/OH)之间的ΔE°'比基于在水性NHY和Y上获得的不可逆伏安图的早期估计值大300 - 400 mV。我们还生成了核糖核苷酸还原酶(RNR)的D-NHY-α2,当它与β2/CDP/ATP一起孵育时会生成D-NHY-α2/β2复合物。通过多频电子顺磁共振(35、94和263 GHz)以及34 GHz H ENDOR光谱,我们确定了建立RNH平面性从而使蛋白质环境对还原电位的扰动最小的氨基质子的超精细耦合(hfc)常数。通过一种普遍适用的LC-MS方法确定了由tRNA/NHY-RS对的错误掺入而掺入分离的NHY-RNR中的Y的量。这些信息对于该NHY探针研究任何感兴趣的蛋白质的实用性至关重要,并用于解决我们先前报道的与NHY取代的RNR相关的活性问题。

相似文献

引用本文的文献

4
Insights into the Thermodynamics and Kinetics of Amino-Acid Radicals in Proteins.蛋白质中氨基酸自由基的热力学和动力学研究进展。
Annu Rev Biophys. 2022 May 9;51:453-471. doi: 10.1146/annurev-biophys-100521-103031. Epub 2022 Feb 8.
5
Selenocysteine substitutions in thiyl radical enzymes.硒半胱氨酸取代硫自由基酶。
Methods Enzymol. 2022;662:119-141. doi: 10.1016/bs.mie.2021.10.014. Epub 2021 Dec 7.

本文引用的文献

3
Genetic code expansion: Synthetases pick up the PACE.遗传密码扩展:合成酶取得进展。
Nat Chem Biol. 2017 Nov 21;13(12):1205-1206. doi: 10.1038/nchembio.2516.
6
A fully automated flow-based approach for accelerated peptide synthesis.一种用于加速肽合成的全自动流动方法。
Nat Chem Biol. 2017 May;13(5):464-466. doi: 10.1038/nchembio.2318. Epub 2017 Feb 28.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验