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两种相关的肠杆菌噬菌体的特性研究,它们是 PhiKZ 样巨型噬菌体的远亲。

Characterization of two related Erwinia myoviruses that are distant relatives of the PhiKZ-like Jumbo phages.

机构信息

Microbiology and Molecular Biology Department, Brigham Young University, Provo, Utah, United States of America.

Plant and Wildlife Sciences Department, Brigham Young University, Provo, Utah, United States of America.

出版信息

PLoS One. 2018 Jul 6;13(7):e0200202. doi: 10.1371/journal.pone.0200202. eCollection 2018.

DOI:10.1371/journal.pone.0200202
PMID:29979759
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6034870/
Abstract

Bacteriophages are a major force in the evolution of bacteria due to their sheer abundance as well as their ability to infect and kill their hosts and to transfer genetic material. Bacteriophages that infect the Enterobacteriaceae family are of particular interest because this bacterial family contains dangerous animal and plant pathogens. Herein we report the isolation and characterization of two jumbo myovirus Erwinia phages, RisingSun and Joad, collected from apple trees. These two genomes are nearly identical with Joad harboring two additional putative gene products. Despite mass spectrometry data that support the putative annotation, 43% of their gene products have no significant BLASTP hit. These phages are also more closely related to Pseudomonas and Vibrio phages than to published Enterobacteriaceae phages. Of the 140 gene products with a BLASTP hit, 81% and 63% of the closest hits correspond to gene products from Pseudomonas and Vibrio phages, respectively. This relatedness may reflect their ecological niche, rather than the evolutionary history of their host. Despite the presence of over 800 Enterobacteriaceae phages on NCBI, the uniqueness of these two phages highlights the diversity of Enterobacteriaceae phages still to be discovered.

摘要

噬菌体是细菌进化的主要力量,因为它们数量巨大,能够感染和杀死宿主并转移遗传物质。感染肠杆菌科的噬菌体尤其受到关注,因为该细菌科包含了危险的动植物病原体。在此,我们报告了从苹果树中分离和鉴定的两种巨型肌尾噬菌体——RisingSun 和 Joad。这两个基因组几乎完全相同,而 Joad 则含有另外两个可能的基因产物。尽管质谱数据支持假定的注释,但它们的 43%的基因产物没有明显的 BLASTP 命中。这些噬菌体与假单胞菌和弧菌噬菌体的亲缘关系也比已发表的肠杆菌科噬菌体更为密切。在有 BLASTP 命中的 140 个基因产物中,81%和 63%的最接近命中分别对应于假单胞菌和弧菌噬菌体的基因产物。这种亲缘关系可能反映了它们的生态位,而不是其宿主的进化历史。尽管 NCBI 上有超过 800 种肠杆菌科噬菌体,但这两种噬菌体的独特性突出了仍有待发现的肠杆菌科噬菌体的多样性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/000f/6034870/45fffcef8361/pone.0200202.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/000f/6034870/affd0af02687/pone.0200202.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/000f/6034870/32f36d3864f9/pone.0200202.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/000f/6034870/d612b506bec5/pone.0200202.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/000f/6034870/2442b4cba7bc/pone.0200202.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/000f/6034870/1cd3746f19b0/pone.0200202.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/000f/6034870/45fffcef8361/pone.0200202.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/000f/6034870/affd0af02687/pone.0200202.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/000f/6034870/32f36d3864f9/pone.0200202.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/000f/6034870/d612b506bec5/pone.0200202.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/000f/6034870/2442b4cba7bc/pone.0200202.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/000f/6034870/1cd3746f19b0/pone.0200202.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/000f/6034870/45fffcef8361/pone.0200202.g006.jpg

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