Jacks T, Townsley K, Varmus H E, Majors J
Proc Natl Acad Sci U S A. 1987 Jun;84(12):4298-302. doi: 10.1073/pnas.84.12.4298.
The primary translation products of retroviral pol genes are polyproteins initiated in an upstream gene (gag). To investigate the manner in which the gag-initiated polyproteins of the mouse mammary tumor virus are produced, we determined the nucleotide sequence of a 1.8-kilobase DNA fragment that spans the region between gag and pol in the C3H strain of mouse mammary tumor virus. The sequence reveals three overlapping open reading frames: the first encodes products of gag (p27gag and p14gag); the second encodes a protein domain of unknown function (termed X) that is highly related to a similarly positioned sequence in simian type D retroviruses and the viral protease (pro); and the third encodes the reverse transcriptase. The reading frames are organized to permit uninterrupted readthrough from gag to pol if ribosomal frameshifts occur in the -1 direction within each of the two overlapping regions, one of which is 16 nucleotides in length and the other 13 nucleotides. Cell-free translation of RNA containing these overlap regions shows that fusion of the reading frames by ribosomal frameshifting occurs efficiently: about one-fourth of the ribosomes traversing the gag-X/pro overlap and one-tenth traversing the X/pro-pol overlap shift frames, generating gag-related polyproteins in ratios similar to those observed in vivo. Synthetic oligonucleotides containing either of the overlap regions inserted into novel contexts do not induce frameshifting; hence the overlapping portions of the reading frames are not sufficient to induce a frameshift event, and a larger sequence context or secondary structure may be implicated.
逆转录病毒pol基因的主要翻译产物是起始于上游基因(gag)的多聚蛋白。为了研究小鼠乳腺肿瘤病毒的gag起始多聚蛋白的产生方式,我们测定了一个1.8千碱基DNA片段的核苷酸序列,该片段跨越了小鼠乳腺肿瘤病毒C3H株中gag和pol之间的区域。该序列揭示了三个重叠的开放阅读框:第一个编码gag的产物(p27gag和p14gag);第二个编码一个功能未知的蛋白结构域(称为X),它与猿猴D型逆转录病毒中位置相似的序列以及病毒蛋白酶(pro)高度相关;第三个编码逆转录酶。如果在两个重叠区域中的每一个区域内,核糖体发生-1方向的移码,则阅读框的组织方式允许从gag到pol进行不间断的通读,其中一个重叠区域长度为16个核苷酸,另一个为13个核苷酸。对含有这些重叠区域的RNA进行无细胞翻译表明,通过核糖体移码实现阅读框融合的效率很高:约四分之一穿过gag-X/pro重叠区域的核糖体和十分之一穿过X/pro-pol重叠区域的核糖体发生移码,产生与gag相关的多聚蛋白,其比例与体内观察到的相似。插入新环境中的含有任一重叠区域的合成寡核苷酸不会诱导移码;因此,阅读框的重叠部分不足以诱导移码事件,可能涉及更大的序列环境或二级结构。