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静息态功能磁共振成像功能网络的拓扑特性改善基于机器学习的自闭症分类。

Topological Properties of Resting-State fMRI Functional Networks Improve Machine Learning-Based Autism Classification.

作者信息

Kazeminejad Amirali, Sotero Roberto C

机构信息

Hotchkiss Brain Institute, University of Calgary, Calgary, AB, Canada.

Biomedical Engineering Graduate Program, University of Calgary, Calgary, AB, Canada.

出版信息

Front Neurosci. 2019 Jan 10;12:1018. doi: 10.3389/fnins.2018.01018. eCollection 2018.

DOI:10.3389/fnins.2018.01018
PMID:30686984
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6335365/
Abstract

Automatic algorithms for disease diagnosis are being thoroughly researched for use in clinical settings. They usually rely on pre-identified biomarkers to highlight the existence of certain problems. However, finding such biomarkers for neurodevelopmental disorders such as Autism Spectrum Disorder (ASD) has challenged researchers for many years. With enough data and computational power, machine learning (ML) algorithms can be used to interpret the data and extract the best biomarkers from thousands of candidates. In this study, we used the fMRI data of 816 individuals enrolled in the Autism Brain Imaging Data Exchange (ABIDE) to introduce a new biomarker extraction pipeline for ASD that relies on the use of graph theoretical metrics of fMRI-based functional connectivity to inform a support vector machine (SVM). Furthermore, we split the dataset into 5 age groups to account for the effect of aging on functional connectivity. Our methodology achieved better results than most state-of-the-art investigations on this dataset with the best model for the >30 years age group achieving an accuracy, sensitivity, and specificity of 95, 97, and 95%, respectively. Our results suggest that measures of centrality provide the highest contribution to the classification power of the models.

摘要

用于疾病诊断的自动算法正在临床环境中得到深入研究。它们通常依靠预先确定的生物标志物来突出某些问题的存在。然而,多年来,研究人员一直面临着为诸如自闭症谱系障碍(ASD)等神经发育障碍寻找此类生物标志物的挑战。有了足够的数据和计算能力,机器学习(ML)算法可用于解释数据并从数千个候选物中提取最佳生物标志物。在本研究中,我们使用了自闭症脑成像数据交换(ABIDE)项目中816名个体的功能磁共振成像(fMRI)数据,引入了一种用于ASD的新型生物标志物提取流程,该流程依靠基于fMRI功能连接的图论指标来为支持向量机(SVM)提供信息。此外,我们将数据集分为5个年龄组,以考虑衰老对功能连接的影响。我们的方法比该数据集上大多数最先进的研究取得了更好的结果,30岁以上年龄组的最佳模型分别实现了95%、97%和95%的准确率、灵敏度和特异性。我们的结果表明,中心性度量对模型的分类能力贡献最大。

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