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基因组测序为理解栽培蘑菇蛛网病病原菌的进化和致病机制提供了线索。

Genome Sequencing of Provides Insights into the Evolution and Pathogenic Mechanisms of the Cobweb Disease Pathogen on Cultivated Mushroom.

机构信息

Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun 130118, China.

Department of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China.

出版信息

Genes (Basel). 2019 Feb 8;10(2):124. doi: 10.3390/genes10020124.

DOI:10.3390/genes10020124
PMID:30744046
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6409746/
Abstract

is one of the mycoparasites that cause cobweb disease on cultivated edible mushrooms. However, the molecular mechanisms of evolution and pathogenesis of on mushrooms are largely unknown. Here, we report a high-quality genome sequence of using the single-molecule, real-time sequencing platform of PacBio and perform a comparative analysis with closely related fungi in the family Hypocreaceae. The genome, the first complete genome to be sequenced in the genus , is 39.09 Mb long, with an N50 of 4.97 Mb, encoding 11,003 proteins. The phylogenomic analysis confirmed its inclusion in Hypocreaceae, with its evolutionary divergence time estimated to be ~170.1 million years ago. The genome encodes a large and diverse set of genes involved in secreted peptidases, carbohydrate-active enzymes, cytochrome P450 enzymes, pathogen⁻host interactions, mycotoxins, and pigments. Moreover, harbors arrays of genes with the potential to produce bioactive secondary metabolites and stress response-related proteins that are significant for adaptation to hostile environments. Knowledge of the genome will foster a better understanding of the biology of and mycoparasitism in general, as well as help with the development of effective disease control strategies to minimize economic losses from cobweb disease in cultivated edible mushrooms.

摘要

是一种引起栽培食用菌蛛网病的菌寄生真菌。然而, 对蘑菇的进化和发病机制的分子机制在很大程度上是未知的。在这里,我们使用单分子实时测序平台 PacBio 报告了 的高质量基因组序列,并与 Hypocreaceae 科中密切相关的真菌进行了比较分析。 基因组,是该属中第一个被测序的完整基因组,长 39.09Mb,N50 为 4.97Mb,编码 11003 个蛋白质。系统发育基因组分析证实其包含在 Hypocreaceae 科中,其进化分歧时间估计在 1.701 亿年前。基因组编码了大量多样化的分泌肽酶、碳水化合物活性酶、细胞色素 P450 酶、病原体-宿主相互作用、真菌毒素和色素相关基因。此外, 还拥有一系列具有产生生物活性次生代谢物和应激反应相关蛋白的基因,这对于适应恶劣环境非常重要。对基因组的了解将有助于更好地理解 的生物学和菌寄生现象,以及帮助制定有效的疾病控制策略,以最大限度地减少栽培食用菌蛛网病造成的经济损失。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d95f/6409746/7707ce9e2d30/genes-10-00124-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d95f/6409746/a78dc021c7af/genes-10-00124-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d95f/6409746/009942b4873d/genes-10-00124-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d95f/6409746/7707ce9e2d30/genes-10-00124-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d95f/6409746/a78dc021c7af/genes-10-00124-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d95f/6409746/009942b4873d/genes-10-00124-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d95f/6409746/7707ce9e2d30/genes-10-00124-g003.jpg

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