Liu Xiaowei, Chen Kai, Chuang Shaochuang, Xu Xihui, Jiang Jiandong
Department of Microbiology, Key Lab of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, China.
Front Microbiol. 2019 Jan 30;10:88. doi: 10.3389/fmicb.2019.00088. eCollection 2019.
Compositions of pollutant-catabolic consortia and interactions between community members greatly affect the efficiency of pollutant catabolism. However, the relationships between community structure and efficiency of catabolic function in pollutant-catabolic consortia remain largely unknown. In this study, an original enrichment (AT) capable of degrading atrazine was obtained. And two enrichments - with a better/worse atrazine-degrading efficiency (ATB/ATW) - were derived from the original enrichment AT by continuous sub-enrichment with or without atrazine. Subsequently, an sp. strain, AT5, that was capable of degrading atrazine was isolated from enrichment AT. The bacterial community structures of these three enrichments were investigated using high-throughput sequencing analysis of the 16S rRNA gene. The atrazine-degrading efficiency improved as the abundance of species increased in enrichment ATB. The relative abundance of was positively correlated with those of and , which enhanced atrazine degradation via promoting the growth of . Furthermore, six genera/families such as and showed a significantly negative correlation with atrazine-degrading efficiency, as they suppressed atrazine degradation directly. These results suggested that atrazine-degrading efficiency was affected by not only the degrader but also some non-degraders in the community. The promotion and suppression of atrazine degradation by and /, respectively, were experimentally validated , showing that shifts in both the composition and abundance in consortia can drive the change in the efficiency of catabolic function. This study provides valuable information for designing enhanced bioremediation strategies.
污染物分解代谢菌群的组成以及群落成员之间的相互作用极大地影响着污染物分解代谢的效率。然而,在污染物分解代谢菌群中,群落结构与分解代谢功能效率之间的关系在很大程度上仍不为人所知。在本研究中,获得了一种能够降解阿特拉津的原始富集培养物(AT)。通过在有或无阿特拉津的情况下连续传代富集,从原始富集培养物AT中衍生出了两种富集培养物——具有更好/更差阿特拉津降解效率的ATB/ATW。随后,从富集培养物AT中分离出了一株能够降解阿特拉津的菌株AT5。利用16S rRNA基因的高通量测序分析研究了这三种富集培养物的细菌群落结构。在富集培养物ATB中,随着某物种丰度的增加,阿特拉津降解效率提高。该物种的相对丰度与另外两个物种的相对丰度呈正相关,它们通过促进后者的生长来增强阿特拉津的降解。此外,诸如某几个属/科等六个属/科与阿特拉津降解效率呈显著负相关,因为它们直接抑制阿特拉津的降解。这些结果表明,阿特拉津降解效率不仅受到降解菌的影响,还受到群落中一些非降解菌的影响。通过实验验证了某物种对阿特拉津降解的促进作用以及某几个属/科对阿特拉津降解的抑制作用,表明菌群组成和丰度的变化均可推动分解代谢功能效率的改变。本研究为设计强化生物修复策略提供了有价值的信息。