Jason L. Choy Laboratory of Single Molecule Biophysics, University of California, Berkeley, CA 94720.
Howard Hughes Medical Institute, University of California, Berkeley, CA 94720.
Proc Natl Acad Sci U S A. 2019 Mar 26;116(13):5920-5924. doi: 10.1073/pnas.1817778116. Epub 2019 Mar 13.
Cells must operate far from equilibrium, utilizing and dissipating energy continuously to maintain their organization and to avoid stasis and death. However, they must also avoid unnecessary waste of energy. Recent studies have revealed that molecular machines are extremely efficient thermodynamically compared with their macroscopic counterparts. However, the principles governing the efficient out-of-equilibrium operation of molecular machines remain a mystery. A theoretical framework has been recently formulated in which a generalized friction coefficient quantifies the energetic efficiency in nonequilibrium processes. Moreover, it posits that, to minimize energy dissipation, external control should drive the system along the reaction coordinate with a speed inversely proportional to the square root of that friction coefficient. Here, we demonstrate the utility of this theory for designing and understanding energetically efficient nonequilibrium processes through the unfolding and folding of single DNA hairpins.
细胞必须在远离平衡的状态下运作,持续利用和消耗能量以维持其组织,并避免停滞和死亡。然而,它们也必须避免不必要的能量浪费。最近的研究表明,与宏观对应物相比,分子机器在热力学上具有极高的效率。然而,控制分子机器高效非平衡运转的原理仍然是一个谜。最近提出了一个理论框架,其中广义摩擦系数定量描述了非平衡过程中的能量效率。此外,它还假设为了最小化能量耗散,外部控制应该以与摩擦系数的平方根成反比的速度沿着反应坐标驱动系统。在这里,我们通过单个 DNA 发夹的展开和折叠证明了该理论在设计和理解高效非平衡过程中的实用性。