Suppr超能文献

利用系统的平衡行为来减少非平衡过程中的能量耗散。

Using a system's equilibrium behavior to reduce its energy dissipation in nonequilibrium processes.

机构信息

Jason L. Choy Laboratory of Single Molecule Biophysics, University of California, Berkeley, CA 94720.

Howard Hughes Medical Institute, University of California, Berkeley, CA 94720.

出版信息

Proc Natl Acad Sci U S A. 2019 Mar 26;116(13):5920-5924. doi: 10.1073/pnas.1817778116. Epub 2019 Mar 13.

Abstract

Cells must operate far from equilibrium, utilizing and dissipating energy continuously to maintain their organization and to avoid stasis and death. However, they must also avoid unnecessary waste of energy. Recent studies have revealed that molecular machines are extremely efficient thermodynamically compared with their macroscopic counterparts. However, the principles governing the efficient out-of-equilibrium operation of molecular machines remain a mystery. A theoretical framework has been recently formulated in which a generalized friction coefficient quantifies the energetic efficiency in nonequilibrium processes. Moreover, it posits that, to minimize energy dissipation, external control should drive the system along the reaction coordinate with a speed inversely proportional to the square root of that friction coefficient. Here, we demonstrate the utility of this theory for designing and understanding energetically efficient nonequilibrium processes through the unfolding and folding of single DNA hairpins.

摘要

细胞必须在远离平衡的状态下运作,持续利用和消耗能量以维持其组织,并避免停滞和死亡。然而,它们也必须避免不必要的能量浪费。最近的研究表明,与宏观对应物相比,分子机器在热力学上具有极高的效率。然而,控制分子机器高效非平衡运转的原理仍然是一个谜。最近提出了一个理论框架,其中广义摩擦系数定量描述了非平衡过程中的能量效率。此外,它还假设为了最小化能量耗散,外部控制应该以与摩擦系数的平方根成反比的速度沿着反应坐标驱动系统。在这里,我们通过单个 DNA 发夹的展开和折叠证明了该理论在设计和理解高效非平衡过程中的实用性。

相似文献

2
Stochastic thermodynamics, fluctuation theorems and molecular machines.随机热力学、涨落定理和分子机器。
Rep Prog Phys. 2012 Dec;75(12):126001. doi: 10.1088/0034-4885/75/12/126001. Epub 2012 Nov 20.
3
Optimal Control of the F-ATPase Molecular Motor.F-ATP酶分子马达的最优控制
J Phys Chem Lett. 2022 Dec 29;13(51):11844-11849. doi: 10.1021/acs.jpclett.2c03033. Epub 2022 Dec 15.
4
Geometry of thermodynamic control.热力学控制的几何结构
Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Oct;86(4 Pt 1):041148. doi: 10.1103/PhysRevE.86.041148. Epub 2012 Oct 26.
5
Optimal control of rotary motors.旋转电机的最优控制。
Phys Rev E. 2019 Jan;99(1-1):012119. doi: 10.1103/PhysRevE.99.012119.
7
Internal friction and nonequilibrium unfolding of polymeric globules.聚合物球状体的内耗与非平衡解折叠
Phys Rev Lett. 2009 Jul 10;103(2):028102. doi: 10.1103/PhysRevLett.103.028102. Epub 2009 Jul 8.
8
Thermodynamics of prediction.预测的热力学。
Phys Rev Lett. 2012 Sep 21;109(12):120604. doi: 10.1103/PhysRevLett.109.120604. Epub 2012 Sep 19.
10
Energy dissipation bounds for autonomous thermodynamic cycles.自主热力学循环的能量耗散界。
Proc Natl Acad Sci U S A. 2020 Feb 18;117(7):3478-3483. doi: 10.1073/pnas.1915676117. Epub 2020 Feb 4.

引用本文的文献

本文引用的文献

1
Thermodynamic geometry of minimum-dissipation driven barrier crossing.最小耗散驱动势垒穿越的热力学几何
Phys Rev E. 2016 Nov;94(5-1):052106. doi: 10.1103/PhysRevE.94.052106. Epub 2016 Nov 3.
6
A minimal optical trapping and imaging microscopy system.一个最小光学捕获和成像显微镜系统。
PLoS One. 2013;8(2):e57383. doi: 10.1371/journal.pone.0057383. Epub 2013 Feb 25.
7
Thermodynamic metrics and optimal paths.热力学指标和最优路径。
Phys Rev Lett. 2012 May 11;108(19):190602. doi: 10.1103/PhysRevLett.108.190602. Epub 2012 May 8.
8
Optimal protocols and optimal transport in stochastic thermodynamics.随机热力学中的最优协议和最优输运。
Phys Rev Lett. 2011 Jun 24;106(25):250601. doi: 10.1103/PhysRevLett.106.250601. Epub 2011 Jun 20.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验