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利用深度学习进行青光眼检测的稳健视盘和杯分割。

Robust optic disc and cup segmentation with deep learning for glaucoma detection.

机构信息

Australian eHealth Research Center, CSIRO, 147 Underwood Ave, Perth, Australia.

Australian eHealth Research Center, CSIRO, 147 Underwood Ave, Perth, Australia.

出版信息

Comput Med Imaging Graph. 2019 Jun;74:61-71. doi: 10.1016/j.compmedimag.2019.02.005. Epub 2019 Apr 5.

DOI:10.1016/j.compmedimag.2019.02.005
PMID:31022592
Abstract

Glaucoma is rated as the leading cause of irreversible vision loss worldwide. Early detection of glaucoma is important for providing timely treatment and minimizing the vision loss. In this paper, we developed a robust segmentation method for optic disc and cup segmentation using a modified U-Net architecture, which combines the widely adopted pre-trained ResNet-34 model as encoding layers with classical U-Net decoding layers. The model was trained on the newly available RIGA dataset, and achieved an average dice value of 97.31% for disc segmentation and 87.61% for cup segmentation, comparable to that of the experts' performance for optic disc/cup segmentation and Cup-Disc-Ratio (CDR) calculation on a reserved RIGA dataset. When tested on DRISHTI-GS and RIM-ONE dataset without re-training or fine-tuning, the model achieved comparable performance to that of the state-of-the-art in literature. We have also fine-tuned the model on two databases, which achieves an average disc dice value of 97.38% and cup dice value of 88.77% for DRISHTI-GS test set, disc dice of 96.10% and cup dice of 84.45% for RIM-ONE database, which is the state-of-the-art performance on both databases in terms of cup dice and disc dice value. The advantage of the proposed method is the combination of the pre-trained ResNet and U-Net, which avoids training the network from scratch, thereby enabling fast network training with less epochs, thus further avoids over-fitting and achieves robust performance.

摘要

青光眼被评为全球致盲的主要原因。早期发现青光眼对于提供及时治疗和最小化视力损失非常重要。在本文中,我们使用改进的 U-Net 架构开发了一种强大的视盘和杯分割方法,该架构结合了广泛采用的预训练 ResNet-34 模型作为编码层和经典 U-Net 解码层。该模型在新的 RIGA 数据集上进行了训练,在视盘分割方面的平均骰子值为 97.31%,在杯分割方面的平均骰子值为 87.61%,与专家对视盘/杯分割和杯盘比(CDR)计算的表现相当在保留的 RIGA 数据集上。当在没有重新训练或微调的 DRISHTI-GS 和 RIM-ONE 数据集上进行测试时,该模型的性能与文献中的最新技术相当。我们还在两个数据库上对模型进行了微调,在 DRISHTI-GS 测试集上获得了平均视盘骰子值为 97.38%和杯骰子值为 88.77%,在 RIM-ONE 数据库上获得了平均视盘骰子值为 96.10%和杯骰子值为 84.45%,这是这两个数据库在杯骰子和视盘骰子值方面的最新技术表现。该方法的优点是预训练的 ResNet 和 U-Net 的结合,避免了从头开始训练网络,从而可以使用更少的 epoch 快速训练网络,从而进一步避免过度拟合并实现稳健的性能。

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