Division of Signaling and Gene Expression, La Jolla Institute, San Diego, CA, USA.
Division of Vaccine Discovery, La Jolla Institute, San Diego, CA, USA.
Sci Immunol. 2019 Apr 26;4(34). doi: 10.1126/sciimmunol.aau7523.
TET enzymes are dioxygenases that promote DNA demethylation by oxidizing the methyl group of 5-methylcytosine to 5-hydroxymethylcytosine (5hmC). Here, we report a close correspondence between 5hmC-marked regions, chromatin accessibility and enhancer activity in B cells, and a strong enrichment for consensus binding motifs for basic region-leucine zipper (bZIP) transcription factors at TET-responsive genomic regions. Functionally, Tet2 and Tet3 regulate class switch recombination (CSR) in murine B cells by enhancing expression of , which encodes the activation-induced cytidine deaminase (AID) enzyme essential for CSR. TET enzymes deposit 5hmC, facilitate DNA demethylation, and maintain chromatin accessibility at two TET-responsive enhancer elements, and , located within a superenhancer in the locus. Our data identify the bZIP transcription factor, ATF-like (BATF) as a key transcription factor involved in TET-dependent expression. 5hmC is not deposited at in activated -deficient B cells, indicating that BATF facilitates TET recruitment to this enhancer. Our study emphasizes the importance of TET enzymes for bolstering AID expression and highlights 5hmC as an epigenetic mark that captures enhancer dynamics during cell activation.
TET 酶是双加氧酶,通过将 5-甲基胞嘧啶的甲基氧化为 5-羟甲基胞嘧啶(5hmC),促进 DNA 去甲基化。在这里,我们报告了 B 细胞中 5hmC 标记区域、染色质可及性和增强子活性之间的密切对应关系,以及 TET 反应性基因组区域中碱性亮氨酸拉链(bZIP)转录因子的共识结合基序的强烈富集。功能上,Tet2 和 Tet3 通过增强编码激活诱导胞嘧啶脱氨酶(AID)酶的基因的表达来调节小鼠 B 细胞的类别转换重组(CSR),AID 酶是 CSR 所必需的。TET 酶在两个 TET 反应性增强子元件和中沉积 5hmC,促进 DNA 去甲基化,并维持染色质可及性,这两个增强子位于 基因座中的一个超级增强子内。我们的数据确定了 bZIP 转录因子 ATF 样(BATF)作为涉及 TET 依赖性表达的关键转录因子。在激活的 -缺陷 B 细胞中,5hmC 不会沉积在 中,这表明 BATF 促进了 TET 向该 增强子的募集。我们的研究强调了 TET 酶对于增强 AID 表达的重要性,并强调了 5hmC 作为一种表观遗传标记,可捕获细胞激活过程中增强子的动态变化。