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对锡金喜马拉雅地区传统发酵豆制品“”的分类学和功能特征的宏基因组学见解 。 (注:原文中“”处应补充具体的豆制品名称)

Metagenomic Insights Into the Taxonomic and Functional Features of , a Traditional Fermented Soybean Product of Sikkim Himalaya.

作者信息

Kumar Jitesh, Sharma Nitish, Kaushal Girija, Samurailatpam Sanjukta, Sahoo Dinabandhu, Rai Amit K, Singh Sudhir P

机构信息

Center of Innovative and Applied Bioprocessing, Mohali, India.

Institute of Bioresources and Sustainable Development, Sikkim Centre, Tadong, India.

出版信息

Front Microbiol. 2019 Aug 2;10:1744. doi: 10.3389/fmicb.2019.01744. eCollection 2019.

DOI:10.3389/fmicb.2019.01744
PMID:31428064
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6688588/
Abstract

is an ethnic, naturally fermented soybean product consumed in the Sikkim Himalayan region of India. In the present study, the whole metagenome sequencing approach was adopted to examine the microbial diversity and related functional potential of , consumed in different seasons. Firmicutes was the abundant phylum in , ranging from 82.31 to 93.99% in different seasons, followed by Actinobacteria and Proteobacteria. At the species level, the prevalent microorganisms were , , , , , and . The abundance of microbial species varied significantly in different seasons. Further, the genomic presence of some undesirable microbes like , , , and , were also detected in the specific season. The metagenomic analysis also revealed the existence of bacteriophages belonging to the family , , and . Examination of the metabolic potential of the metagenome depicted information about the biocatalysts, presumably involved in the transformation of protein and carbohydrate polymers into bioactive molecules of health-beneficial effects. The genomic resource of several desirable enzymes was identified, such as β-galactosidase, β-glucosidase, β-xylosidase, and glutamate decarboxylase, etc. The catalytic function of a novel glutamate decarboxylase gene was validated for the biosynthesis of γ-aminobutyric acid (GABA). The results of the present study highlight the microbial and genomic resources associated with , and its importance in functional food industry.

摘要

是一种在印度锡金喜马拉雅地区食用的民族天然发酵豆制品。在本研究中,采用全宏基因组测序方法来检测不同季节食用的该豆制品的微生物多样性及相关功能潜力。厚壁菌门是该豆制品中的优势菌门,在不同季节中占比从82.31%到93.99%不等,其次是放线菌门和变形菌门。在物种水平上,常见的微生物有[具体微生物名称1]、[具体微生物名称2]、[具体微生物名称3]、[具体微生物名称4]、[具体微生物名称5]和[具体微生物名称6]。不同季节微生物物种的丰度差异显著。此外,在特定季节还检测到了一些不良微生物如[具体不良微生物名称1]、[具体不良微生物名称2]、[具体不良微生物名称3]和[具体不良微生物名称4]的基因组存在。宏基因组分析还揭示了属于[噬菌体家族名称1]、[噬菌体家族名称2]和[噬菌体家族名称3]的噬菌体的存在。对该豆制品宏基因组代谢潜力的检测描绘了有关生物催化剂的信息,这些生物催化剂可能参与将蛋白质和碳水化合物聚合物转化为具有健康有益作用的生物活性分子。鉴定出了几种理想酶的基因组资源,如β - 半乳糖苷酶、β - 葡萄糖苷酶、β - 木糖苷酶和谷氨酸脱羧酶等。验证了一个新型谷氨酸脱羧酶基因在γ - 氨基丁酸(GABA)生物合成中的催化功能。本研究结果突出了与该豆制品相关的微生物和基因组资源及其在功能性食品工业中的重要性。

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