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利用辐射损伤进行微 ED 数据的实验相分析。

Experimental Phasing of MicroED Data Using Radiation Damage.

机构信息

Howard Hughes Medical Institute, Departments of Biological Chemistry and Physiology, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095, USA.

Howard Hughes Medical Institute, Departments of Biological Chemistry and Physiology, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095, USA.

出版信息

Structure. 2020 Apr 7;28(4):458-464.e2. doi: 10.1016/j.str.2020.01.008. Epub 2020 Feb 4.

DOI:10.1016/j.str.2020.01.008
PMID:32023481
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7313391/
Abstract

We previously demonstrated that microcrystal electron diffraction (MicroED) can be used to determine atomic-resolution structures from vanishingly small three-dimensional crystals. Here, we present an example of an experimentally phased structure using only MicroED data. The structure of a seven-residue peptide is solved starting from differences to the diffraction intensities induced by structural changes due to radiation damage. The same wedge of reciprocal space was recorded twice by continuous-rotation MicroED from a set of 11 individual crystals. The data from the first pass were merged to make a "low-dose dataset." The data from the second pass were similarly merged to form a "damaged dataset." Differences between these two datasets were used to identify a single heavy-atom site from a Patterson difference map, and initial phases were generated. Finally, the structure was completed by iterative cycles of modeling and refinement.

摘要

我们之前已经证明,微晶体电子衍射(MicroED)可用于从几乎不存在的三维晶体中确定原子分辨率结构。在这里,我们提供了一个仅使用 MicroED 数据进行实验相结构的示例。从由于辐射损伤引起的结构变化引起的衍射强度差异开始,解决了一个七残基肽的结构。通过连续旋转 MicroED 从一组 11 个单个晶体中记录了同一楔形倒易空间两次。将第一次通过的数据合并以形成“低剂量数据集”。将第二次通过的数据同样合并以形成“损坏数据集”。这两个数据集之间的差异用于从 Patterson 差异图中识别单个重原子位置,并生成初始相位。最后,通过建模和精修的迭代循环完成结构。

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本文引用的文献

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Reducing dynamical electron scattering reveals hydrogen atoms.减少动态电子散射可揭示氢原子。
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The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination.低温电子显微镜方法MicroED作为小分子结构测定的强大工具。
ACS Cent Sci. 2018 Nov 28;4(11):1587-1592. doi: 10.1021/acscentsci.8b00760. Epub 2018 Nov 2.
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Rapid Structure Determination of Microcrystalline Molecular Compounds Using Electron Diffraction.利用电子衍射快速测定微晶分子化合物的结构
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MicroED structure of the NaK ion channel reveals a Na partition process into the selectivity filter.钠钾离子通道的微晶电子衍射结构揭示了钠离子进入选择性过滤器的分配过程。
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Analysis of Global and Site-Specific Radiation Damage in Cryo-EM.低温电子显微镜中全局和局域辐射损伤分析。
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