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关键结构基序平衡异双核 Mn/Fe 蛋白中的金属结合和氧化反应性。

Key Structural Motifs Balance Metal Binding and Oxidative Reactivity in a Heterobimetallic Mn/Fe Protein.

机构信息

Department of Biochemistry and Biophysics, Stockholm University, SE-106 91 Stockholm, Sweden.

Department of Cell and Molecular Biology, Uppsala University, SE-751 24 Uppsala, Sweden.

出版信息

J Am Chem Soc. 2020 Mar 18;142(11):5338-5354. doi: 10.1021/jacs.0c00333. Epub 2020 Mar 9.

Abstract

Heterobimetallic Mn/Fe proteins represent a new cofactor paradigm in bioinorganic chemistry and pose countless outstanding questions. The assembly of the active site defies common chemical convention by contradicting the Irving-Williams series, while the scope of reactivity remains unexplored. In this work, the assembly and C-H bond activation process in the Mn/Fe R2-like ligand-binding oxidase (R2lox) protein is investigated using a suite of biophysical techniques, including time-resolved optical spectroscopy, global kinetic modeling, X-ray crystallography, electron paramagnetic resonance spectroscopy, protein electrochemistry, and mass spectrometry. Selective metal binding is found to be under thermodynamic control, with the binding sites within the apo-protein exhibiting greater Mn affinity than Fe affinity. The comprehensive analysis of structure and reactivity of wild-type R2lox and targeted primary and secondary sphere mutants indicate that the efficiency of C-H bond activation directly correlates with the Mn/Fe cofactor reduction potentials and is inversely related to divalent metal binding affinity. These findings suggest the R2lox active site is precisely tuned for achieving both selective heterobimetallic binding and high levels of reactivity and offer a mechanism to examine the means by which proteins achieve appropriate metal incorporation.

摘要

杂双金属 Mn/Fe 蛋白代表了生物无机化学中的一个新的辅助因子范例,提出了无数悬而未决的问题。活性位点的组装违背了常见的化学规律,与 Irving-Williams 系列相矛盾,而反应性的范围仍未得到探索。在这项工作中,使用一系列生物物理技术,包括时间分辨光学光谱、全局动力学建模、X 射线晶体学、电子顺磁共振波谱、蛋白质电化学和质谱,研究了 Mn/Fe R2 样配体结合氧化酶 (R2lox) 蛋白中的组装和 C-H 键活化过程。选择性金属结合受热力学控制,apo 蛋白中的结合位点表现出比 Fe 更高的 Mn 亲和力。对野生型 R2lox 以及靶向一级和二级结构突变体的结构和反应性的综合分析表明,C-H 键活化的效率与 Mn/Fe 辅助因子的还原电位直接相关,与二价金属结合亲和力成反比。这些发现表明,R2lox 活性位点经过精确调整,既能实现选择性杂双金属结合,又能保持高反应活性,并提供了一种研究蛋白质实现适当金属掺入的机制。

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