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铁载体生物合成途径中的合成酶 IucA 采用有序机制。

The Siderophore Synthetase IucA of the Aerobactin Biosynthetic Pathway Uses an Ordered Mechanism.

机构信息

Department of Structural Biology, University at Buffalo, The State University of New York, Buffalo, New York 14203, United States.

出版信息

Biochemistry. 2020 Jun 16;59(23):2143-2153. doi: 10.1021/acs.biochem.0c00250. Epub 2020 Jun 1.

Abstract

Biosynthesis of the hydroxamate siderophore aerobactin requires the activity of four proteins encoded within the operon. Recently, we biochemically reconstituted the biosynthetic pathway and structurally characterized IucA and IucC, two enzymes that sequentially couple N-acetyl-N-hydroxylysine to the primary carboxylates of citrate. IucA and IucC are members of a family of non-ribosomal peptide synthetase-independent siderophore (NIS) synthetases that are involved in the production of other siderophores, including desferrioxamine, achromobactin, and petrobactin. While structures of several members of this family were solved previously, there is limited mechanistic insight into the reaction catalyzed by NIS synthetases. Therefore, we performed a terreactant steady-state kinetic analysis and herein provide evidence for an ordered mechanism in which the chemistry is preceded by the formation of the quaternary complex. We further probed two regions of the active site with site-directed mutagenesis and identified several residues, including a conserved motif that is present on a dynamic loop, that are important for substrate binding and catalysis.

摘要

铁载体aerobactin 的生物合成需要在 操纵子内编码的四种蛋白质的活性。最近,我们通过生物化学方法重新构建了生物合成途径,并对 IucA 和 IucC 这两种酶进行了结构表征,这两种酶依次将 N-乙酰-N-羟赖氨酸与柠檬酸的一级羧基结合。IucA 和 IucC 是一类非核糖体肽合成酶独立铁载体(NIS)合成酶的成员,这些酶参与其他铁载体的生产,包括去铁胺、无色杆菌素和石油杆菌素。尽管先前已经解决了该家族的几个成员的结构,但对 NIS 合成酶催化的反应的机制了解有限。因此,我们进行了三反应物稳态动力学分析,并在此提供了证据,证明该反应遵循有序机制,其中化学过程先于形成四元复合物。我们进一步通过定点突变对活性位点的两个区域进行了探测,并鉴定了几个对底物结合和催化很重要的残基,包括存在于动态环上的保守基序。

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